|
Name : serS (NP1692A) Accession : YP_326503.1 Strain : Natronomonas pharaonis DSM 2160 Genome accession: NC_007426 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 816518 - 817888 bp Length : 1371 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTATCGAGGCAGTTCGTCCGTGAAAACCCCGAGGAGGTCCGTCGCGCACTCGACACCAAGGGCGTCGACGTCGACCT CGACCGTATCCTCGACATCGACGAGGAGTGGCGCGAACTCAAGGCGGAAGGCGACGACCTCAGGCGGCAGCGCAACGAGG TCTCCAGCGAAATCGGCAAGCTCAAGCGCGACGGCGAGGAGGAAGCCGCAGCAGAAGCAATCGAACGGTCCCAAGAGCTC AAAGAAGAAATCGAGGCCGTCGAAGACCGTGCCGACGAACTAGAGTCGGAGCTAGAAGCGGCGCTCCTGCGGCTTCCGAA CGTGCCCCACCCCGATGCCCCGGTCGGCGACGACGAGTCCGACAACGTCGAAATCGACCGCTGGGGCTTCGATGACCGGC GCTCGCTGCCCGACGAGGTCGTTCCCCACTACGACCTCGGGGAGGAGCTGGATATCCTCGATTTCGAACGCGGGGCCAAG GTTTCCGGCGGCGGCTTCTACTTCGCGAAGGGCGAGGGCGCGCGGCTCGAACACGCGCTCGTCCAGTTCATGCTCGATGT CCACCGCGACGAGCACGGCTACACCGATGTTTTCCCGCCACTTCCGGTCAACTCGGCGTCGATGCGCGGAACCGGTCAGT TCCCGAAGTTCGTCGAGGACGCGTACCGAATCGGCGGTGACAACGACGACCCATACGACGACGACGACCTGTGGCTGCTG CCGACCGCGGAGGTGCCGGTCACCAACATGTATCGTGACGAAATCCTCCTTGATGACGACCTGCCGCTCAAGCAGCAGGC CTATTCGCCGAACTTCCGCCGGGAAGCCGGCGAGCACGGCACCGAAACCCGTGGTATCGTCCGTGTCCACCAGTTCAACA AGGTCGAGATGGTCAATTTCGTCCGGCCCGAAAACAGCTACGACCGGCTCGAAGGACTGCTCGGCGAAGCGACCGACGTG CTCGAACGACTCGGCCTCCCCTACCGAGTGCTTGAGATGTGTACCGGCGACATGGGCTTTACACAGGCGAAAAAGTACGA CGTTGAGGTGTGGGCTCCCGGCGACGACATGGAAGACGGCCCGGATGTCGGCGGCCGCTGGCTCGAGGTTTCGTCGGTGT CGAACTTCGAGGACTTTCAGGCACGCCGGGCACACATCCAGTATCGGCCGGAACAGCACGAATCGGCGGAGTATATCCAC ACGCTCAACGCCTCGGGACTGGCAGTGCCGCGCGTCGTCGTTGCGATTCTCGAATACTATCAGAACGACGACGGCACCGT CGACGTTCCTGAACCCCTCCAGCCATACATGGGCGGCACGGATGTCATCGACGGCCAGGACCCGGTCGGCGAGTCAGCTC TCGGCGAATAG Protein sequence : MLSRQFVRENPEEVRRALDTKGVDVDLDRILDIDEEWRELKAEGDDLRRQRNEVSSEIGKLKRDGEEEAAAEAIERSQEL KEEIEAVEDRADELESELEAALLRLPNVPHPDAPVGDDESDNVEIDRWGFDDRRSLPDEVVPHYDLGEELDILDFERGAK VSGGGFYFAKGEGARLEHALVQFMLDVHRDEHGYTDVFPPLPVNSASMRGTGQFPKFVEDAYRIGGDNDDPYDDDDLWLL PTAEVPVTNMYRDEILLDDDLPLKQQAYSPNFRREAGEHGTETRGIVRVHQFNKVEMVNFVRPENSYDRLEGLLGEATDV LERLGLPYRVLEMCTGDMGFTQAKKYDVEVWAPGDDMEDGPDVGGRWLEVSSVSNFEDFQARRAHIQYRPEQHESAEYIH TLNASGLAVPRVVVAILEYYQNDDGTVDVPEPLQPYMGGTDVIDGQDPVGESALGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-80 | 48 |
