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Name : etpD (L7033) Accession : YP_325593.1 Strain : Genome accession: NC_007414 Putative virulence/resistance : Virulence Product : type II secretion protein Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 26714 - 28642 bp Length : 1929 bp Strand : + Note : 100 pct identical to locus ECPO157 accession Y09824, alternate start for etpD chosen in Y09824 DNA sequence : GTGTTCACTACAGTAATTTTGGGGGCCATTCCAGGGTGGGGGGCTGAATTTTCGGCCAACTTTAAAGATACGGATATTCA GGAGTTCATAAATACTGTCAGTAAAAATTTACACAAAACGGTAATAATTAATCCTGACGTGCAGGGAACCATCACTGTAC GCAGCTACGATATGCTGAACGAGGAACAATATTATCAGTTCTTTCTCAGTGTGCTGGACGTTTATGGTTTTGCTGTGGTC GATATGCACAACGGTATACTGAAAGTAGTGCGCTCAAAAGATGCCAAAACGTCGGCGGTGCCGGTAGCTAGTGATGTCAG TCCCGGGACTGGTGATGAGGTTGTTACCCGGGTGGTCCCCGTAAGTAACGTGGCAGCCAGAGATCTGGCGCCTTTGCTGC GTCAGCTCAATGATAATGCTGGCGCAGGAAGCGTGGTGCATTATGAACCTTCTAATGTTTTGTTGATGACCGGACGTGCT GCAGTGATGAAACGGTTGATGGAGATTGTTGAACGTGTGGATAAGGTGGGTAATCGCAGCGTTGCCACGGTCCCGCTCAC CTACGCGTCCGCAACAGACGTAGCCAGACTTGTTACGGAACTGACTAAAGAAACAGATAAGACAGCTATACCTGCTTGGA TGACGGCGAAACTGGTTGCAGACGAGAGGACAAACTCAGTGCTCGTCAGCGGAGAGCCAATCTCCCAACAGCGTATCATC TCCATAATTAAGCAACTGGATCGTCAGGAGGATGTTCAGGGTAATACTAAGGTGATTTACCTGAAATATGCGAAGGCGAA GGATTTAGTGGAAGTCCTGACAGGTATCAGCAGCAGTATTGAAAACGACTCTAAAAAGAGTCCGTCAACGGAAGCCTTGC GCAAAGGAGTGACGATTAAATCCCACGAACAAACCAATGCCCTGATCCTGACGGGGGCCCCTGACGTCATCCGCGACCTT GAAAATGTGATTTCGCAGTTGGATATTCGTCGTCCTCAGGTCCTGGTGGAGGCCATCATTGCTGAAATACAGGATGCTGA CGGGCTGAACCTTGGGATCCAGTGGGTGAATAAACATGCCGGTGTGGCGCAGTTCACCAGTACCGGTTTACCTATTACCA CGATGGTTCAGACTCGTCAGAACGAAATCTTAGACAGCGATCAGAGCAATGCCCTGAGCATGTTTAACGGAATTGCAGCG GGGTTTTATCAGGGAAACTGGGCGATGCTGTTGACGGCGCTCTCCACAAGTAGCAAGAATGATATCTTGGCGACCCCCAG TATTGTCACGCTGGACAATATGGAGGCCACTTTCAATGTTGGTCAGGAGGTCCCGGTACTTTCGGGCTCACAGACAACCT CTGGGGACAATATTTTTAACACGGTCGAGCGCAAAACGGTGGGGATCAAACTCAGGGTAAAACCCCAGATCAACGAGGGT GATTCCGTGTTACTGGAGATAGAACAGGAGGTGTCCGGTGTGGCGGACACTGCAGTAGCCACCACTACTGACTTGGGAGC AACCTTCAACACCCGAACAGTGACCAATGCCATGCTGGTCGGGAATGGCGAAACGGTGGTGGTCGGAGGATTACTGGATA AGTCGATCAGGGGGAGTGAGAGTAAAGTGCCACTGCTGGGGGATATCCCGGTACTGGGGCATCTTTTTCGCGCAAAAAGC GAACAGACAGCTAAGCGTAATCTGATGCTGTTCATTCGGCCAACTATTATTCGTGAGCGCGACGGATTTCGTCATGCTTC GGCCGAAAAATACCAGTCGTTTAATCAGGAACAGGTGCAGTCGCGTGGCAAAGAAACAACGGCGCTGACGCTGAATGAGG AACAGCTCAGGCTGTCCCCCGATCAAGACGATACGGCTTTCCGGAAGGTGAAAGCGGCGATTGCTGCGTTTTATGCGCAG GAGATGTAA Protein sequence : MFTTVILGAIPGWGAEFSANFKDTDIQEFINTVSKNLHKTVIINPDVQGTITVRSYDMLNEEQYYQFFLSVLDVYGFAVV DMHNGILKVVRSKDAKTSAVPVASDVSPGTGDEVVTRVVPVSNVAARDLAPLLRQLNDNAGAGSVVHYEPSNVLLMTGRA AVMKRLMEIVERVDKVGNRSVATVPLTYASATDVARLVTELTKETDKTAIPAWMTAKLVADERTNSVLVSGEPISQQRII SIIKQLDRQEDVQGNTKVIYLKYAKAKDLVEVLTGISSSIENDSKKSPSTEALRKGVTIKSHEQTNALILTGAPDVIRDL ENVISQLDIRRPQVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTRQNEILDSDQSNALSMFNGIAA GFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEG DSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAKS EQTAKRNLMLFIRPTIIRERDGFRHASAEKYQSFNQEQVQSRGKETTALTLNEEQLRLSPDQDDTAFRKVKAAIAAFYAQ EM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-117 | 45 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 1e-126 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| etpD | YP_325593.1 | type II secretion protein | VFG2047 | Protein | 8e-115 | 44 |
