|
Name : lysS (Ava_3150) Accession : YP_323653.1 Strain : Anabaena variabilis ATCC 29413 Genome accession: NC_007413 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 3912207 - 3913892 bp Length : 1686 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCGGAAGAAGATATCCGTGCCGCTAGGCTGGAGAAAGTAGAACAACTCAAGCAGCTAGGAACTAACCCCTACGCTTA CCGTTGGGAGTCTACCCATCACGCCGCCCAATTGCAAGAAAAATTTGCTGATTTAACCAGTGGTGAAGAAGTCGATACAG AAGTTGCCATTGCCGGACGCATTATGGCGCGTCGCGTTTTCGGTAAATTGGCTTTCTTCACCTTGGAAGATGAAACAGGC ACTATTCAGCTTTATTTAGAGAAAAATCGTATCCAAGAAAGCATGGCAGAAACTGATGCCGATGCTTTTAATCATCTCAA ACAACTCACAGATGTAGGAGATATTCTGGGAGCCAAGGGAACCATAAAACGGACTGAAAAGGGCGAGTTATCGATTTACG TCAAAGAATATACCATCCTCACCAAATCCCTACTGCCGCTACCCGACAAGTGGCATGGGTTAACGGATGTTGCCAAGCGC TACCGTCAACGCTACGTTGATTTAATTGTTAACCCCGAAGTCCGCCAAACTTTCCGCCGTCGCGCCCAAATTACGGCTGG GATTCGCCGCTATTTGGAACAAAGGGATTTTCTAGAGATTGAAACCCCAGTTTTGCAAAGTGAAACTGGTGGTGCTGATG CGCGTCCCTTCATCACTTACCACAACACCTTAGAAATGGAGTTGTATCTGCGGATTGCCACAGAACTCCACCTCAAACGG TTGATTGTCGGTGGTTTTGAAAAAGTATTTGAGTTGGGGCGCGTTTTCCGCAATGAGGGAATTTCTACCAGACACAACCC TGAATTTACCTCAATTGAAATTTACCAAGCCTACGCCGACTACAACGATATGATGGCGCTAACAGAAGGTATTATCACCA CTGTTGCCCAAGATGTACTCGGTACGCTGCAAATTACCTACCAAGGCGAAACGGTAGATTTGACACCACCTTGGCGACGG GTGACAATGCACGATTTAGTGAAAGAATATACGGGCTTGGATTTCCATTCTTTCCAAACACTAGAAGAAGCGAAATCAGC AAGTAAAAATGCTGGAATTCCTGGTGTAGATGAAGCCCAAACTATAGGAAAAATCCTGAATTTAGCATTTGAAGAAAAGG TAGAAGCTAACTTAATTCAGCCGACCTTTGTCATTGATTATCCTGTAGAAATTTCGCCATTAGCTAAACCTCACCGTTCT CAACCTGGGTTAGTAGAAAGATTTGAATTATTCATAGTCGGGCGGGAGACTGCGAATAGTTTCTCAGAATTAACAGACCC CATCGACCAAAGAGAACGTTTGGAAGCCCAAGCAGCCAAAAAAGCCGCCGGTGACTTAGAAGCCCAAGGTGTAGATGAAG ATTTCTTAACTGCGTTGGAATATGGTATGCCACCCACAGGCGGTTTAGGTATTGGGATTGATCGGTTAGTCATGTTATTA ACTGATTCTGCCAGCATTCGAGATGTAATTGCTTTCCCTCTACTCAAACCCGAAGGCAGCTTTATTAAGGAATATCGCTA TGAGTCAACAACTCAAACACTGACTATGGAGTTTGATAGTGGAAGTGTTTACGAATATTTCAAAGTACCGCTTACTGTCA AGGAAGAATTAGATAATGCACCGTCTAAGGGTCAATATTTCCATAAGTTTATTAAAGGGAAATTCAAGTATGAACAATTG AGTTGA Protein sequence : MSEEDIRAARLEKVEQLKQLGTNPYAYRWESTHHAAQLQEKFADLTSGEEVDTEVAIAGRIMARRVFGKLAFFTLEDETG TIQLYLEKNRIQESMAETDADAFNHLKQLTDVGDILGAKGTIKRTEKGELSIYVKEYTILTKSLLPLPDKWHGLTDVAKR YRQRYVDLIVNPEVRQTFRRRAQITAGIRRYLEQRDFLEIETPVLQSETGGADARPFITYHNTLEMELYLRIATELHLKR LIVGGFEKVFELGRVFRNEGISTRHNPEFTSIEIYQAYADYNDMMALTEGIITTVAQDVLGTLQITYQGETVDLTPPWRR VTMHDLVKEYTGLDFHSFQTLEEAKSASKNAGIPGVDEAQTIGKILNLAFEEKVEANLIQPTFVIDYPVEISPLAKPHRS QPGLVERFELFIVGRETANSFSELTDPIDQRERLEAQAAKKAAGDLEAQGVDEDFLTALEYGMPPTGGLGIGIDRLVMLL TDSASIRDVIAFPLLKPEGSFIKEYRYESTTQTLTMEFDSGSVYEYFKVPLTVKEELDNAPSKGQYFHKFIKGKFKYEQL S |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-108 | 48 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 3e-84 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_323653.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-108 | 48 |
