Gene Information

Name : Tbd_0098 (Tbd_0098)
Accession : YP_313856.1
Strain : Thiobacillus denitrificans ATCC 25259
Genome accession: NC_007404
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 104260 - 105540 bp
Length : 1281 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCGTTGTTGCGGTTGTCGGGCTGGGCTACGTCGGCCTGCCCTTGGCGGTGGAATTCGGCAAGAAGACGCGCACTGT
CGGTTTTGACCTTTCACGCGAAAAAATCGAGCACTACCGTCGATTCTGCGACCCCACCGGCGAAGTGTCGTCGGACGACC
TCAAGGCGGCGACGCATCTCACCGTGACGACCGACCCGGCCGCGCTGGCCGAGGCCGATTTCATCGTCGTCGCGGTACCG
ACCCCGGTCGACGCGGCGCATATCCCGGATTTCTCCCCGCTCGTCGGCGCGTCGACCACGGTCGGCAAACACATGAAAAA
AGGCGCGACGGTGATCTACGAATCGACAGTCTACCCCGGCGCCACCGAGGAGGTCTGCATCCCGATTCTCGAGAAGAATT
CGGGCATGACGTGGCGCCACGGCTTCCACGTCGGCTACTCGCCCGAGCGCGTGAACCCCGGCGACAAGGAAAGGACGATC
ACCCGGATCGTCAAGGTCGTCTCGGGCGACGACGCGGCGACCCTCGACAAGGTCGCCGAGCTCTACGGCAGCGTGATCAC
GGCCGGCGTGCACCGCGCGAGTTCGATCAAGGTCGCCGAAGCGGCCAAGGTCATCGAGAACACGCAGCGCGACCTCAATA
TCGCGCTCATGAACGAACTCTCGCTGATCTTCCACCGCCTGGGCATCGACACGCTCGAGGTGTTGAAGGCCGCCGGAACC
AAGTGGAACTTCCTGCCCTTCCGCCCGGGCCTCGTCGGCGGCCACTGCATCGGCGTCGACCCCTACTACCTGACGCACAA
GGCCGACATGCTCGGCTACCACCCGCAGGTCATCCTCGCCGGCCGCCGCATCAACGACGGCATGGGCGCCTACGTCGCCC
AGGAAACGGTGAAGAAAATGATCGCCGGCGGTGTCCAGGTCAAGGGCGCCAAGGTCAACGTGCTCGGGCTCACGTTCAAG
GAAAACTGTCCCGACCTGCGCAATTCCAAGGTCGTCGACGTCATCCGCGAGCTGCAATCCTTCGGCTGCGAGGTGCACGT
CCACGATCCGCTCGGCGAGTCGAAGGAGGCCGAACACGAATACGGGATCGGCCTCACCGCGTGGGAGGAGCTGCCGGCGT
GCGACGCGCTCGTCGCCGCGGTCTCGCATGCCGCCTACCTCGACAAGCCGTTCGCGGAACTGACCGCGACCCTGAAGAAG
GGCGGCACCTTCACCGACGTCAAGTCGGCGTATGACCCGGCGACCGTGGAAGCCGCGGGCTTCGCCCTATGGAGGCTCTG
A

Protein sequence : 
MSVVAVVGLGYVGLPLAVEFGKKTRTVGFDLSREKIEHYRRFCDPTGEVSSDDLKAATHLTVTTDPAALAEADFIVVAVP
TPVDAAHIPDFSPLVGASTTVGKHMKKGATVIYESTVYPGATEEVCIPILEKNSGMTWRHGFHVGYSPERVNPGDKERTI
TRIVKVVSGDDAATLDKVAELYGSVITAGVHRASSIKVAEAAKVIENTQRDLNIALMNELSLIFHRLGIDTLEVLKAAGT
KWNFLPFRPGLVGGHCIGVDPYYLTHKADMLGYHPQVILAGRRINDGMGAYVAQETVKKMIAGGVQVKGAKVNVLGLTFK
ENCPDLRNSKVVDVIRELQSFGCEVHVHDPLGESKEAEHEYGIGLTAWEELPACDALVAAVSHAAYLDKPFAELTATLKK
GGTFTDVKSAYDPATVEAAGFALWRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 5e-104 55
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-96 53
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-96 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tbd_0098 YP_313856.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 1e-96 53