Gene Information

Name : Tbd_0943 (Tbd_0943)
Accession : YP_314701.1
Strain : Thiobacillus denitrificans ATCC 25259
Genome accession: NC_007404
Putative virulence/resistance : Unknown
Product : integrase prophage protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1003571 - 1004773 bp
Length : 1203 bp
Strand : -
Note : -

DNA sequence :
GTGCTTACCGACATGAAAGTGCGCCAGGCGAAACCTGGTCCCAACGTCCAGAAACTCTCCGATTCTCAGGGCCTGTTTCT
TCATATATCCCCGTCGGGTGGAAAGTGGTGGCGCCTAGCTTATCGTTACACGGGAAAGCAGAAGCTGCTGTCGCTTGGAA
CCTACCCGGCGGTCTCTCTTGCAGACGCCCGGCAGCGGCGTGATGAAGCCAAAAAGCTGCTCGCCCACGGCGTAGACCCG
GCCGAAAATAGAAAGGCTACAAAGCAGGCTCGGCAGGACCGCGCGAGCAACAGTTTTGAAGCCGTCGCTCGCGAATGGCA
TGCGAAGTTTTCTTCGACATGGAGCGCAAACCATAGCGACCGCATCATCAGGCGCTTGGAAAATGACATTTTTCCGTGGT
TAGGCGATAAGCCGATCGCCGACATTACACCCCCAACCCTTCTCGCAGCCCTACGGCGTATCGAGGAGCGCGGAGCGGTC
GAAACCGCCCATCGCGCCATGCAGAACTGCGGCCAAGTTTTTCGCTACTCAGTAGCGACCGGCCGCGCGGAACGAGACCC
TTCGCAAGACCTGAAAGGCGCCCTCCCGCCTGTTGCCAAGAGCCACTTCAAAAGCATCACCGACCCCGTCCAAATTGGAG
TGCTGCTGCGCAATATAGATGGCTACAGCGGTGGCCCCGTCGTGCGAAGCGCACTTCGTTTGGCACCCTTAATTTTTGTT
CGTCCAGGCGAATTAAGACATGCCGAATGGGCACACTTCGACCTCGGGGCTGCCGAATGGCGCTATACGGTATCCAAGAC
CAATACCGAGCACATAGTCCCTTTGAGCCGTCAAGCCATTTCGGTCTTGGAAGAACTGCAGCCCTTAACAGGGCACAAGC
GCTATGTTTTTCCGGCGAACCGGGGGGAAGGCCGCCCCATGAGCGAGAACACTGTCAACGCTGCGCTGAGGTCGCTTGGC
TACGATAAGGAAACACTAACAGGGCACGGCTTCCGCGCCATGGCGCGGACCCTTCTTGATGAGGTTCTAGGGTTCCGCCC
AGACATCATCGAGCATCAGTTAGCGCACGCCGTCCGCGATCCGCTAGGGCGAGCCTATAACCGCACCACCCACCTTCCGG
AGCGCCGAAAAATGATGCAGGGCTGGGCAGACTACTTAGATGAACTAAAAGCTGGAGCAACGGTTATTCGGCTTTATGGA
TAA

Protein sequence :
MLTDMKVRQAKPGPNVQKLSDSQGLFLHISPSGGKWWRLAYRYTGKQKLLSLGTYPAVSLADARQRRDEAKKLLAHGVDP
AENRKATKQARQDRASNSFEAVAREWHAKFSSTWSANHSDRIIRRLENDIFPWLGDKPIADITPPTLLAALRRIEERGAV
ETAHRAMQNCGQVFRYSVATGRAERDPSQDLKGALPPVAKSHFKSITDPVQIGVLLRNIDGYSGGPVVRSALRLAPLIFV
RPGELRHAEWAHFDLGAAEWRYTVSKTNTEHIVPLSRQAISVLEELQPLTGHKRYVFPANRGEGRPMSENTVNAALRSLG
YDKETLTGHGFRAMARTLLDEVLGFRPDIIEHQLAHAVRDPLGRAYNRTTHLPERRKMMQGWADYLDELKAGATVIRLYG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 5e-79 45
int AAD44730.1 Int Not tested SHI-2 Protein 5e-79 45
aec33 AAW51716.1 Int Not tested AGI-3 Protein 6e-79 45
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-77 45
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-77 45
int AAC31482.1 CP4-like integrase Not tested LEE Protein 9e-78 45
int ACU09430.1 integrase Not tested LEE Protein 9e-78 45
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 6e-78 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 6e-78 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-78 44
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 4e-70 43
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-73 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-73 43
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 9e-73 42
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-71 42
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 8e-76 41
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-70 41
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-68 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 4e-72 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 4e-72 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-71 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-71 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-71 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 7e-71 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 5e-72 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-71 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-71 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-70 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-71 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-71 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-71 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-71 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 6e-72 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 6e-72 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tbd_0943 YP_314701.1 integrase prophage protein VFG0783 Protein 5e-78 45
Tbd_0943 YP_314701.1 integrase prophage protein VFG0598 Protein 2e-78 44
Tbd_0943 YP_314701.1 integrase prophage protein VFG1693 Protein 6e-72 42
Tbd_0943 YP_314701.1 integrase prophage protein VFG1536 Protein 1e-68 41
Tbd_0943 YP_314701.1 integrase prophage protein VFG0626 Protein 2e-72 41