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Name : Tbd_1871 (Tbd_1871) Accession : YP_315629.1 Strain : Thiobacillus denitrificans ATCC 25259 Genome accession: NC_007404 Putative virulence/resistance : Virulence Product : epimerase/dehydratase-like biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1967090 - 1968934 bp Length : 1845 bp Strand : - Note : - DNA sequence : ATGAAGTTTAATTCGCGCACCCTCGTCATCATCGTCTACGACATCCTGGTGGCGGCGTTCGCCTGGCTTGGCGCCTACTG GCTGCGCTTCAATCTCGACGTGCCGCCGGAGTTCGAGACCGCCGCGCTCGCGACGCTGATCTGGGTTGTGCCGCTGCAAG CCGTCGTATTCTGGCGCTTCGGCCTGTATCGCGGTATCTGGCGCTTCGCGAGCTTGCCCGACCTCAAGCGTATCGTGCTC GCTGCGGGCCTAGCGGCGCTGCTGATCCCTGTTGCGTTGGTGCTCTTTCGCGTCCACGCCATCGTTCCGCGTTCGGTGCT GATTCTCGACCCGCTGCTGCTGGTCATGGTGATGGGCGGCAGCCGGCTCGCCTACCGCGCGTGGAAGGAGCACCGGCTCG CGAGCGTGCTGCGCCCCGACAGCAAACCTGTGCTGGTGGCGGGTGCGGGCTCGGCGGCCGACTTCCTGCTCCGCGAACTC GCGCGCAACCCGGCGGGCTTCCATGTCGTTGGCCTGCTCGACGACAGCCGCGAGAAGCAGGGGCGGCTCGTTCAGGGGGT GCCGGTTCTCGGCGTGCTCGACGATGCCGCGGTGGTCGCGAAGCGCTTGGGCGTCGACGACGTCGTCCTTGCGCTGCCTT CAGCCGCGCACGAGATCCGCAAGCGCATCACCGAGGCGTGCACCGGCGCAGGTCTCAACGTGATGACCGTTCCTTCGCTC GAAGATCTGGTGGGCGGCCGCGTTTCGGTGTCGAGCCTGCGGCGCATCGAGCTCGACGACCTCCTCGGACGCGATCCCGT GCAGCTCGACGACAGCGGCCTGCATGGCTTGCTGACGGGGCAGGTGGTCATGGTGACCGGCGCGGGTGGCTCGATCGGCG CCGAGCTCTGCCGGCAGATCGCGCGCTTCGCACCGGCCAAGCTCGTGCTGTTCGAGCAGTCCGAGCTCGCGCTGTACGCG ATGGAGCAGGAGCTGCCGCGCCGCCATCCGGAACTGGCAGTCGTGCCGGTGATCGGCGACGCCAAGAACGCTGCGTGGGT CAATCGCGTCATGGAGATGCATCGGCCGGCGATCGTCTTCCACGCCGCGGCGTATAAGCACGTTCCGCTGATGGAGAACG GCAACGCCTGGGAAGCGGTGAAGAACAACGTGCTCGGCACGCAGGTCGTCGCCGCGGCGGCGCAGGTGCATGGCGTCGGA AAGTTCGTGTTGATTTCGACCGACAAGGCCGTCAATCCGACCAACGTGATGGGTGCGAGCAAGCGCCTTGCCGAGATGGC GTGTCAGGCGATGCAACAGCGCGCCGGCGATGCCCCGACCGGTACGCGTTTCGTATCGGTGCGGTTCGGCAACGTGCTCG GATCGTCGGGCAGCGTCATCCCAAAGTTTCAGAAGCAGATCGAAGCGGGCGGACCGGTGACGGTCACGCATCCCGAAATC ACCCGCTACTTCATGTCGATTCCGGAAGCCGCGCAGCTCGTCCTGCAGGCAGGCCTGATGGGTAAAGGCGGCGAAATCTT CGTGCTCGACATGGGCGAGCCCGTGAAGATCGCCGAGCTTGCGAAGCTCATGATCCGGCTGTCGGGCGCGGACGAAGCGC GCATACGCATCGAGTACACCGGCCTGCGCCCGGGCGAGAAGCTCTACGAGGAGCTGCTCGCGGACGACGAATCGACGCTT CCGACCCCGCATCCGAAGCTGCGCGTCGCCAAGGCGCGGCCCGCAGACCCGGGCTGGCATGCCGAATGCCTCGACTGGCT CGCGTATCCGGATAGCTACGACGAGGCCACGGTCAAGCGCCAGCTCAAGACCTGGGTGCCGGAATACCAGCCGGAATCCG CGTGA Protein sequence : MKFNSRTLVIIVYDILVAAFAWLGAYWLRFNLDVPPEFETAALATLIWVVPLQAVVFWRFGLYRGIWRFASLPDLKRIVL AAGLAALLIPVALVLFRVHAIVPRSVLILDPLLLVMVMGGSRLAYRAWKEHRLASVLRPDSKPVLVAGAGSAADFLLREL ARNPAGFHVVGLLDDSREKQGRLVQGVPVLGVLDDAAVVAKRLGVDDVVLALPSAAHEIRKRITEACTGAGLNVMTVPSL EDLVGGRVSVSSLRRIELDDLLGRDPVQLDDSGLHGLLTGQVVMVTGAGGSIGAELCRQIARFAPAKLVLFEQSELALYA MEQELPRRHPELAVVPVIGDAKNAAWVNRVMEMHRPAIVFHAAAYKHVPLMENGNAWEAVKNNVLGTQVVAAAAQVHGVG KFVLISTDKAVNPTNVMGASKRLAEMACQAMQQRAGDAPTGTRFVSVRFGNVLGSSGSVIPKFQKQIEAGGPVTVTHPEI TRYFMSIPEAAQLVLQAGLMGKGGEIFVLDMGEPVKIAELAKLMIRLSGADEARIRIEYTGLRPGEKLYEELLADDESTL PTPHPKLRVAKARPADPGWHAECLDWLAYPDSYDEATVKRQLKTWVPEYQPESA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 5e-94 | 46 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-90 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Tbd_1871 | YP_315629.1 | epimerase/dehydratase-like biosynthesis protein | VFG0029 | Protein | 3e-80 | 44 |
| Tbd_1871 | YP_315629.1 | epimerase/dehydratase-like biosynthesis protein | VFG1300 | Protein | 2e-90 | 43 |
