Gene Information

Name : Tbd_1807 (Tbd_1807)
Accession : YP_315565.1
Strain : Thiobacillus denitrificans ATCC 25259
Genome accession: NC_007404
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1909872 - 1911194 bp
Length : 1323 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACCCTCGAACCGCCCGCGCATCCTGCTCGTCGACGACGAGCCCGACCTGCTCGACCTGATGGAGCTCACGCTTCT
CAAGATGGGCCTCGAAACCGACCGCGCGCTGACCGTCACCGACGCCTGTTCCCGGCTCGCGAATACGCCTTATGACTTGT
GCCTGACCGACATGCGCCTCGGCGACGGCGAAGGTCTGGAAGTCATCGCCGCGGCCAATGCCCTGCCGGTCCCGGTCCCC
GCGGCCGTCATCACGGCTTACGGCAACGCCGGCAACGCCGTCGCGGCGCTCAAGGCCGGCGCCTTCGACTACCTCGCCAA
GCCGGTGGCGCTCGATCAATTGCGCACGCTCGTGAAGTCCGCGCTGCAGGTCCCGGCCTCGTCGGGTCAGGCGGCGACAG
CCCGCGGGCTCATCGGAAACTCGAGCGCGATGCAGGACATCCGTGCCCGCATCGCCAAGCTCGCGCGCACGCAGGCGCCG
GTTCACATCAGCGGCGAGTCAGGCAGCGGCAAGGAGCTCGCCGCACGTCTGATCCACGAAACGAGCAATCGGGCCGACAA
GCCGCTGGTCGCCGTCAACTGTGGCGCGATTCCCGAGGCGCTCATGGAGAGCGAATTCTTCGGCTATCGCAAGGGCGCCT
TCACGGGTGCGGAAGCCGATCGCACCGGCTTCTTCCAAGCGGCCAACGGCGGCACGCTCTTCCTCGACGAGGTCGGCGAC
CTGCCGCTGTCGATGCAGGTCAAGCTGCTGCGCGTGCTGCAGGAAAAGAAGGTGCGCAAGGTCGGCGCGACCACCGAGGA
AGACGTCGACGTGCGCATCATCAGCGCGACGCACCAGAATCTCGCGGCACTCGTCGAAGCCGGCCGATTCCGCCAGGATC
TCTATTACCGGCTCAACGTCATCGACCTGCTCATGCCGAGCCTGCGCGACCGCGCCGAGGACATCCCGGAAATGGCGCGC
TTTCTGCTCGAAAAGCTCGGCGGACGCGCGGTCGAACTCGAGCGCGACGCCGAAAAGGCACTCTGCACCTACGCTTTCCC
CGGCAACGTGCGTGAACTCGAAAACATCCTCGAACGTGCGCTCGCCCTGTGCGAGAACGCGCGCATCCGGGCCGCGGACC
TCAACCTCGTCCCCCCGCCGCCTTCGACCGCGGCGATGCCGGGAAGCAAGTATCCACTGCAGGACTACCTGGATCAGACC
GAACGCGCGGCCATCATCGAAGCGCTCGAGCAGACTCGATACAACAAGACCGCGGCGGCGCGGCTACTCGGCGTGACCTT
TCGCAGCCTGCGCTATCGGCTGGAACGCCTGGGCATCGAATAG

Protein sequence : 
MKPSNRPRILLVDDEPDLLDLMELTLLKMGLETDRALTVTDACSRLANTPYDLCLTDMRLGDGEGLEVIAAANALPVPVP
AAVITAYGNAGNAVAALKAGAFDYLAKPVALDQLRTLVKSALQVPASSGQAATARGLIGNSSAMQDIRARIAKLARTQAP
VHISGESGSGKELAARLIHETSNRADKPLVAVNCGAIPEALMESEFFGYRKGAFTGAEADRTGFFQAANGGTLFLDEVGD
LPLSMQVKLLRVLQEKKVRKVGATTEEDVDVRIISATHQNLAALVEAGRFRQDLYYRLNVIDLLMPSLRDRAEDIPEMAR
FLLEKLGGRAVELERDAEKALCTYAFPGNVRELENILERALALCENARIRAADLNLVPPPPSTAAMPGSKYPLQDYLDQT
ERAAIIEALEQTRYNKTAAARLLGVTFRSLRYRLERLGIE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-79 46
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-79 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tbd_1807 YP_315565.1 Fis family transcriptional regulator BAC0467 Protein 2e-66 45
Tbd_1807 YP_315565.1 Fis family transcriptional regulator BAC0089 Protein 5e-62 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tbd_1807 YP_315565.1 Fis family transcriptional regulator VFG1214 Protein 8e-103 57
Tbd_1807 YP_315565.1 Fis family transcriptional regulator VFG0116 Protein 2e-52 43