Gene Information

Name : smpB (Tbd_1756)
Accession : YP_315514.1
Strain : Thiobacillus denitrificans ATCC 25259
Genome accession: NC_007404
Putative virulence/resistance : Unknown
Product : SsrA-binding protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0691
EC number : -
Position : 1847053 - 1847502 bp
Length : 450 bp
Strand : +
Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca

DNA sequence :
ATGAGCATCGCCGACAACAAAAAAGCCTTCCACGATTACTTCATCGAGGAGCGTTTCGAGGCTGGCCTCGTGCTCGAAGG
CTGGGAGGTGAAGGCGATCCGCGCCGGCCGCGTGCAGCTGAAGGAGGCCTACGTCGTCGTCAAGAACGGCGCCGTCTACC
TGATCGGCTGCCACATCAGCCCGTTGCCGACCGCATCGACGCATATCCATCCCGACCCCACGCGTTCGCGCAAGCTGCTG
CTGCATGCCGCCGAAATCAACAAGCTCATCGGTAAGACCGAACGCGCCGGCTTCACGCTCGTCCCGCTCGACATGCACTA
TTCGAAGGGGCGCATCAAGCTTGAAATCGGCCTCGCCAAGGGCAAGAAGCAGCACGACAAGCGCGCCGCCGAGAAAGACC
GCGAATGGCAGCGCGAGAAGCAGCGGCTCGTCCGCTCGGCGCAGCATTGA

Protein sequence :
MSIADNKKAFHDYFIEERFEAGLVLEGWEVKAIRAGRVQLKEAYVVVKNGAVYLIGCHISPLPTASTHIHPDPTRSRKLL
LHAAEINKLIGKTERAGFTLVPLDMHYSKGRIKLEIGLAKGKKQHDKRAAEKDREWQREKQRLVRSAQH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
smpB NP_230495.1 SsrA-binding protein Not tested VPI-1 Protein 5e-36 51
unnamed AET14351.1 SsrA-binding protein Not tested SaPI68111 Protein 3e-24 46
smpB YP_001800894.1 SsrA-binding protein Not tested Not named Protein 9e-20 46