Gene Information

Name : fliP (Tbd_1610)
Accession : YP_315368.1
Strain : Thiobacillus denitrificans ATCC 25259
Genome accession: NC_007404
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1693769 - 1694530 bp
Length : 762 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
GTGAAAAGTAAATTATTTCACCGCGTCGCGCAGGCGCTCGTCATGCTGGCCGCGCTCGCCCTTCCGACGTTCGCGCTCGC
CCAGAGCGCCGGCCTGCCGGCGTTCACGAGCACGCCGTCGGGCGGCGGCGGCCAGACCTACACGCTCAGCCTGCAGACGC
TGCTGCTGCTGACGTCGCTCTCCTTCCTGCCCGCGGCCCTGCTGATGATGACGAGCTTCACGCGCATCATCATCGTGCTG
TCGCTGCTGCGCCACGCGCTCGGCACACAGTCGTCGCCGCCGAATCAGGTGCTCATCGGACTCGCGCTGTTCCTAACGCT
GTTCGTGATGGGGCCGACCTTCGACAAGATCTACGTCGAGGCATATCAGCCGCTGGCGGAAAACCGCATCCAGATGCAGG
AGGCGCTCGACAAGGGCGCCGTGCCGCTACGCGCCTTCATGCTCAAGCAGACGCGCGAGAGCGACCTCGCGCTGTTCGTT
AAGATGTCGCGCAGCCCGGCGCCGAAGACGGCCGCCGACATTCCGATGCGCGTGCTGATTCCGGCCTACATCACGAGCGA
ACTCAAGACCGCGTTCCAGATCGGCTTCGCGGTGTTCATCCCCTTTCTGATCATCGACATGGTCGTCGCCAGCATCCTCA
TGGCGATGGGCATGATGATGGTCTCGCCCGCGATCGTCGCGCTGCCGTTCAAGATCATCCTGTTCGTGCTCGTGGACGGC
TGGAACCTGCTGCTCGGCTCGCTCGCACAAAGCTTTTACTAG

Protein sequence : 
MKSKLFHRVAQALVMLAALALPTFALAQSAGLPAFTSTPSGGGGQTYTLSLQTLLLLTSLSFLPAALLMMTSFTRIIIVL
SLLRHALGTQSSPPNQVLIGLALFLTLFVMGPTFDKIYVEAYQPLAENRIQMQEALDKGAVPLRAFMLKQTRESDLALFV
KMSRSPAPKTAADIPMRVLIPAYITSELKTAFQIGFAVFIPFLIIDMVVASILMAMGMMMVSPAIVALPFKIILFVLVDG
WNLLLGSLAQSFY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-32 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-32 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-31 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-31 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-31 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-31 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 6e-30 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 6e-30 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-30 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-30 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-30 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-28 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-28 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-28 41
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-30 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 4e-20 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 4e-20 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-29 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_315368.1 flagellar biosynthesis protein FliP VFG2338 Protein 7e-66 70
fliP YP_315368.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-65 69
fliP YP_315368.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-59 66
fliP YP_315368.1 flagellar biosynthesis protein FliP VFG2016 Protein 6e-55 65
fliP YP_315368.1 flagellar biosynthesis protein FliP VFG0394 Protein 4e-32 43
fliP YP_315368.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-34 42
fliP YP_315368.1 flagellar biosynthesis protein FliP VFG0519 Protein 8e-31 42
fliP YP_315368.1 flagellar biosynthesis protein FliP VFG0188 Protein 4e-33 42