Gene Information

Name : fliP (Tbd_1095)
Accession : YP_314853.1
Strain : Thiobacillus denitrificans ATCC 25259
Genome accession: NC_007404
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1155392 - 1156117 bp
Length : 726 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAGTCGCCTGCTGCTGTTGACGCTCGCTCTGAGCACGCCCGCTCTGGGCGCGGAACCGACCGTGCCGCTGCTCGCGGT
GACGCCGGCCGCAGGCGGCGAGGTGATTGGCGTGCCGGCCGCGAGCCTGCCGTGGCTGCTGCTGTTTCCGTTTCTTCCGG
CCTTGCTGCTCGCGTTCACCGCGTTCACCCGGATCGCGGTCGTGCTGTTCCTGTTGCGTCAGGGCATCGGCAGCCCGACG
GCGCCGCCGAATCTCGTGCTGACCGGCCTCGCCGTGCTGCTGACGCTGTTCGTGATGTCGCCGGCGCTGAAGACGATCAA
CGCGGACGCCTACGAGCCGTATCTCGCGGGAACGCTGGCCCTCGACGAGGCCGCCGCCGAGGCGGCCGCGCCGCTCAAGC
GCTTCATGCTGCATCAGACGCGTGCGGAGGATCTCGCGCTTTTCGTCGAGGACGACCCGACCGTTGATCCGAGGCGCGCG
GAAACGGTTCCGCTCGCCGCGCTCGCGCCGGCCTTCCTTACGAGCGAACTGAAGACCGCGTTCCAGATCGGCTTCATGGT
CGTTCTGCCGTTTCTGGTGATCGATCTTGTCGTCGCGGCCGTGCTCACCGCGCTCGGAATGATCATGCTGCCGCCGCAAC
TCGTTTCGCTGCCGCTCAAGCTCTTGCTGTTCGTCGCGGTCGACGGCTGGCATCTGCTGGTCGGCTCCCTCATCGGCAGC
TTCTGA

Protein sequence : 
MSRLLLLTLALSTPALGAEPTVPLLAVTPAAGGEVIGVPAASLPWLLLFPFLPALLLAFTAFTRIAVVLFLLRQGIGSPT
APPNLVLTGLAVLLTLFVMSPALKTINADAYEPYLAGTLALDEAAAEAAAPLKRFMLHQTRAEDLALFVEDDPTVDPRRA
ETVPLAALAPAFLTSELKTAFQIGFMVVLPFLVIDLVVAAVLTALGMIMLPPQLVSLPLKLLLFVAVDGWHLLVGSLIGS
F

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-16 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-16 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-15 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-15 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-15 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-15 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_314853.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-31 58
fliP YP_314853.1 flagellar biosynthesis protein FliP VFG2338 Protein 5e-29 55
fliP YP_314853.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-30 55
fliP YP_314853.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-29 52