Gene Information

Name : SSON_0088 (SSON_0088)
Accession : YP_309118.1
Strain : Shigella sonnei Ss046
Genome accession: NC_007384
Putative virulence/resistance : Unknown
Product : IS1 ORF
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1662
EC number : -
Position : 97888 - 98391 bp
Length : 504 bp
Strand : +
Note : Code: L; COG: COG1662

DNA sequence : 
ATGCCGGGCAACTGCACGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT
AACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAAT
CGCGCCAGCGCTCGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATG
GCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGA
ATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGC
AGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTAT
CTGAACATAAAACACTATCAATAA

Protein sequence : 
MPGNCTHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRSLFYAYDSLRKTVVAHVFGERTM
ATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY
LNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 1e-73 96
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 1e-73 96
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 1e-73 96
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 3e-71 96
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 5e-72 93
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 4e-72 92
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 4e-72 92
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 2e-71 91
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 3e-71 91
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 3e-54 91
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 1e-69 90
aec38 AAW51721.1 InsB Not tested AGI-3 Protein 1e-56 90

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON_0088 YP_309118.1 IS1 ORF VFG0612 Protein 4e-70 90