Gene Information

Name : SSON_3934 (SSON_3934)
Accession : YP_312697.1
Strain : Shigella sonnei Ss046
Genome accession: NC_007384
Putative virulence/resistance : Unknown
Product : IS21 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 4155340 - 4156137 bp
Length : 798 bp
Strand : -
Note : Code: L; COG: COG1484

DNA sequence :
ATGCATGAACTGGAAGTCCTGCTGAGTCGCCTGAAAATGGAGCATCTGAGTTATCACGTTGAAAGCCTGCTGGAACAGGC
AGCTAAAAAAGAGCTGAACTACCGGGAGTTCCTGTGCATGGCGCTACAGCAGGAATGGAACGGCAGGCATCAGCGCGGTA
TGGAGTCCAGGCTGAAGCAGGCTCGTCTGCCGTGGGTCAAAACGCTGGAGCAGTTCGACTTTACCTTCCAGCCGGGCATC
GACCGTAAGGTTGTCCGGGAACTGGCTGGTCTGGCGTTCGTGGAGCGCAGCGAAAACGTGATCCTGCTGGGCCCTCCTGG
TGTCGGAAAAACTCATCTGGCCATAGCTCTTGGCGTGAAAGCGGTGGATGCGGGACATCGGGTACTGTTTATGCCACTGG
ACAGACTGATCGCGACACTGATGAAAGCGAAACAGGAAAACCGGCTGGAGCGTCAGCTACAGCAACTGAGTTATGCCCGG
GTGTTGATCCTGGATGAAATAGGCTATCTGCCGATGAACAGAGAGGAAGCCAGTCTGTTCTTCCGGCTACTGAACCGTCG
ATATGAAAAAGCGAGCATCATACTGACGTCAAACAAAGGGTTCGCAGACTGGGGAGAAATGTTCGGAGATCACGTACTGG
CAACAGCGATCCTGGATCGGCTGCTACATCACTCAACCACGCTGAATATCAAAGGAGAGAGTTACCGGTTAAAAGAGAAA
CGTAAAGCTGGAGTGCTGACCAAAAACACAACGCCAATCAGTGATGATGAAATGGTGGAAAGCGGACAGCATCAGTAA

Protein sequence :
MHELEVLLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARLPWVKTLEQFDFTFQPGI
DRKVVRELAGLAFVERSENVILLGPPGVGKTHLAIALGVKAVDAGHRVLFMPLDRLIATLMKAKQENRLERQLQQLSYAR
VLILDEIGYLPMNREEASLFFRLLNRRYEKASIILTSNKGFADWGEMFGDHVLATAILDRLLHHSTTLNIKGESYRLKEK
RKAGVLTKNTTPISDDEMVESGQHQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 4e-48 47
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 3e-38 47
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 1e-47 46
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 1e-47 46
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 1e-47 46
unnamed CAA21402.1 - Not tested HPI Protein 1e-47 46
api84 CAF28558.1 putative transposase Not tested YAPI Protein 1e-47 46
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 1e-47 46
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 1e-47 46
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 1e-47 46
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 1e-47 46
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 1e-47 46
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 7e-47 45
EC042_4097 YP_006098380.1 putative transposase Not tested Tn2411 Protein 2e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON_3934 YP_312697.1 IS21 ORF2 VFG1460 Protein 2e-38 47
SSON_3934 YP_312697.1 IS21 ORF2 VFG1627 Protein 6e-48 46
SSON_3934 YP_312697.1 IS21 ORF2 VFG1606 Protein 6e-48 46
SSON_3934 YP_312697.1 IS21 ORF2 VFG1515 Protein 6e-48 46
SSON_3934 YP_312697.1 IS21 ORF2 VFG1663 Protein 4e-47 45