|
Name : SSON_3904 (SSON_3904) Accession : YP_312675.1 Strain : Shigella sonnei Ss046 Genome accession: NC_007384 Putative virulence/resistance : Unknown Product : IS911 ORF2 Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 4119494 - 4120333 bp Length : 840 bp Strand : - Note : Code: L; COG: COG2801 DNA sequence : GTGGTCACACTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGG CAGACGGGCTGTATTACGCAGTCAGGTACTTGAGCTACATGGCATCAGCCACGGTTCGGCCGGAGCAAGAAGCATCGCCA CAATGGCAACCCGGAGAGGCTACCAGATGGGACGCTGGCTTGCTGGCAGGCTCATGAAAGAGCTGGGGCTGGTCAGCTGT CAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGT GACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTC TCGACCTGTTCGCAAGAAAACCAGTGGGCTGTGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAA ATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACAGCGATCAGGGCAGTCATTATACGAGCAGGCAGTT CCGGCAGTTATTGTGGCGATACCAGATCAGACAGAGTATGAGCCGGCGCGGAAACTGCTGGGATAACAGCCCAATGGAAC GCTTCTTCAGGAGTCTGAAGAACGAATGGATGCCGGTGGTGGGTTACGTAAGCTTCAGCGAGGCAGCTCACGCCATAACG GACTATATCGTTGGATATTACAGCGCACTAAGACCGCACGAATATAACGGTGGGTTACCCCCAAACGAATCGGAAAATCG ATACTGGAAAAACTCTAACTCGGTGGCCAGTTTTTGTTGA Protein sequence : MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSC QQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGCAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAIT DYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| l7094 | CAD33743.1 | ORF B protein | Not tested | PAI I 536 | Protein | 2e-96 | 89 |
| orfB | CAE85178.1 | OrfB protein, IS911 | Not tested | PAI V 536 | Protein | 2e-96 | 89 |
| orfB | ACX47958.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 6e-92 | 67 |
| VC1789 | NP_231424.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 9e-92 | 67 |
| VPI2_0008c | ACA01825.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 6e-92 | 67 |
| orfB | YP_001217329.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 9e-92 | 67 |
| orfB | AGK06910.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 6e-92 | 67 |
| overlap with orfA characteristic of IS3 family members | AGK06947.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 6e-92 | 67 |
| orfB | AGK06993.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 6e-92 | 67 |
| orfB | AGK07051.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 6e-92 | 67 |
| unnamed | AAC31485.1 | L0006 | Not tested | LEE | Protein | 7e-63 | 63 |
| ECs4537 | NP_312564.1 | hypothetical protein | Not tested | LEE | Protein | 9e-63 | 63 |
| aec65 | AAW51748.1 | Aec65 | Not tested | AGI-3 | Protein | 2e-63 | 62 |
| Z5089 | NP_290241.1 | transposase | Not tested | LEE | Protein | 1e-63 | 62 |
| unnamed | ACU09432.1 | IS911 transposase orfB | Not tested | LEE | Protein | 7e-64 | 62 |
| unnamed | CAI43898.1 | putative transposase | Not tested | LEE | Protein | 2e-63 | 62 |
| ECO111_3779 | YP_003236114.1 | putative IS602 transposase OrfB | Not tested | LEE | Protein | 2e-66 | 62 |
| RS04 | AAP82949.1 | putative transposase | Not tested | PAPI-2 | Protein | 6e-60 | 54 |
| tnpB | CAB61574.1 | transposase B | Not tested | HPI | Protein | 1e-34 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SSON_3904 | YP_312675.1 | IS911 ORF2 | VFG1484 | Protein | 1e-96 | 89 |
| SSON_3904 | YP_312675.1 | IS911 ORF2 | VFG1122 | Protein | 4e-92 | 67 |
| SSON_3904 | YP_312675.1 | IS911 ORF2 | VFG0785 | Protein | 4e-64 | 62 |
