Gene Information

Name : SSON_3838 (SSON_3838)
Accession : YP_312615.1
Strain : Shigella sonnei Ss046
Genome accession: NC_007384
Putative virulence/resistance : Unknown
Product : IS600 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 4030429 - 4030731 bp
Length : 303 bp
Strand : -
Note : Code: L; COG: COG2963

DNA sequence : 
ATGAGCAGAAAAACCCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCCTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCTCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATTAAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGAAAAATACGCGTTAA

Protein sequence : 
MSRKTQRYSKEFKAEAVRTVPENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLE
RDILKKATAYFAQESLKNTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 4e-39 99
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 4e-39 99
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-38 98
unnamed AAF09021.1 unknown Not tested SHI-O Protein 1e-38 98
unnamed AAF09029.1 unknown Not tested SHI-O Protein 1e-38 98
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 7e-39 98
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 5e-33 97
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 5e-33 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON_3838 YP_312615.1 IS600 ORF1 VFG1707 Protein 3e-39 98