Gene Information

Name : SSON_3837 (SSON_3837)
Accession : YP_312614.1
Strain : Shigella sonnei Ss046
Genome accession: NC_007384
Putative virulence/resistance : Unknown
Product : IS600 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 4029574 - 4030287 bp
Length : 714 bp
Strand : -
Note : Code: L; COG: COG2801

DNA sequence :
GTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGCTGGCAGAGAATGGCATCATTGTTGG
TCGTGACCGACTGGCACGTCTTCGTAAGGAGCTAAGGCTACGCTGTAAGCAGAAACGCAAGTTCAGAGCGACTACGAACT
CGAACCACAATCTGCCAGTTGCGCCAAATCTGCCGAACCAGACGTTCGCTCCTACAGCACCAAATCAGGTCTGGGTGGCG
GACCTGACGTATGTTGCCACACAGGAGGGATGGTTGTACCTCGCTGGCATCAAAGATGTTTATACGTGCGAAATTGTCGG
CTACGCCATGGGAGAGCGCATGACAAAAGAGCTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTG
CCGGGCTAATCCACCACTCTGATCGAGGTTCACAGTACTGCGCATACGATTACCGGGTCATACAGGAGCAGTCTGGTCTG
AAAACATCAATGTCGCGTAAAGGTAACTGTTACGACAACGCTCCGATGGAAAGCTTCTGGGGAACGCTGAAAAATGAGAG
CCTGAGCCACTATCGTTTTAATAACCGGGATGAAGCCATCTCAGTAATACGGGAATACATTGAGATTTTCTACAATCGTC
AGCGTCGTCACTCTCGTCTGGGGAATATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGGCTGCTTAA

Protein sequence :
MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNSNHNLPVAPNLPNQTFAPTAPNQVWVA
DLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGL
KTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 8e-95 99
unnamed AAF09022.1 unknown Not tested SHI-O Protein 7e-95 99
unnamed AAF09030.1 unknown Not tested SHI-O Protein 7e-95 99
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 7e-95 99
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 6e-95 99
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-94 98
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 8e-95 98
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 4e-95 98
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-94 98
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 4e-40 45
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 4e-40 45
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 4e-40 45
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 1e-36 43
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-37 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 4e-37 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 7e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON_3837 YP_312614.1 IS600 ORF2 VFG1706 Protein 3e-95 99
SSON_3837 YP_312614.1 IS600 ORF2 VFG1631 Protein 8e-37 43