Gene Information

Name : SSON_2654 (SSON_2654)
Accession : YP_311512.1
Strain : Shigella sonnei Ss046
Genome accession: NC_007384
Putative virulence/resistance : Unknown
Product : IS629 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2813123 - 2813770 bp
Length : 648 bp
Strand : -
Note : Code: L; COG: COG2801

DNA sequence :
GTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGAC
CATCAGCCGGAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGG
CTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATTGTG
GGGTGGCGGGTCTCATCGTCCATGGAGACGACATTCGTGCTGGATGCACTGGAGCAGGCGTTATGGGCCCGTCGACCGTC
CGGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTAC
TGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTA
ATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCATACTCACGTGGGTGGACTGGTATAACAATCGACG
ATTGCTGGAAAGGCTGGGCCATACTCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAACGATGATCTGG
CAGCCTGA

Protein sequence :
MARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIV
GWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEV
IHRKSWKNRAEVELAILTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 4e-94 99
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-94 99
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 7e-90 99
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 9e-94 99
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-93 99
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-93 99
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-93 98
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-93 98
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-91 97
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-91 97
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-91 97
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-93 97
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-92 96
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-90 96
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-92 96
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-90 95
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 8e-89 95
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-90 95
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-90 95
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-90 95
c3594 NP_755469.1 transposase Not tested PAI I CFT073 Protein 3e-71 94
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 3e-90 94
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-39 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSON_2654 YP_311512.1 IS629 ORF2 VFG1715 Protein 9e-72 94
SSON_2654 YP_311512.1 IS629 ORF2 VFG1602 Protein 2e-90 94