Gene Information

Name : yfcS (SSON_2393)
Accession : YP_311271.1
Strain : Shigella sonnei Ss046
Genome accession: NC_007384
Putative virulence/resistance : Virulence
Product : chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 2523427 - 2524071 bp
Length : 645 bp
Strand : -
Note : Code: NU; COG: COG3121

DNA sequence : 
TTGATATTTAATGAAAGCGACAAATCAATCAGCGTGACGTTGCGCAATAACGATCCGAAACTGCCTTATCTGGCCCAAAG
CTGGATCGAAGATGAAAAGGGTAACAAGATCAGTTCACCGTTAACTGTTCTGCCACCGGTGCAACGCATCGATTCAATGA
TGAACGGGCAGGTAAAAGTGCAGGGAATGCCGGATATCAACAAATTGCCTGCCGATCGTGAAAGCCTGTTCTACTTCAAC
GTGCGTGAGATCCCGCCAAAATCAAACAAAGCCAACACGCTGCAAATAGCACTACAAACGCGTATTAAGTTGTTCTGGCG
ACCGAAGGCGCTGGAGAACGTCAGCATGAAAAACCCCTGGCAATATAAGGTTACTTTAACCCGCAACGGTCAGGAATTTA
CCGTCAATAACCCGACGCCGTATTACGTCATTTTCAGTAATGCCAGCACACAGAAAAATGGCAATCCTGCAGCCGGTTTC
TCGCCAATAGTGATGTCGCCGAAAACCTCTGCACCGCTGAATGTGAAGATGGGTAGCGTGCCGGTACTGACCTATGTCAA
CGACTATGGCGCTCGGATGCCGCTCTTTTTCACTTGCAACGGTAACAGTTGCCAGGTCGATGAAGAGCAGAGCCGCAAAG
GCTGA

Protein sequence : 
MIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKISSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESLFYFN
VREIPPKSNKANTLQIALQTRIKLFWRPKALENVSMKNPWQYKVTLTRNGQEFTVNNPTPYYVIFSNASTQKNGNPAAGF
SPIVMSPKTSAPLNVKMGSVPVLTYVNDYGARMPLFFTCNGNSCQVDEEQSRKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 1e-42 44
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 7e-46 44
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 2e-45 44
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 2e-45 44
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 2e-45 44
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 2e-45 44
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 2e-45 44
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 8e-46 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfcS YP_311271.1 chaperone VFG0885 Protein 3e-43 44
yfcS YP_311271.1 chaperone VFG1547 Protein 3e-46 44
yfcS YP_311271.1 chaperone VFG0896 Protein 7e-46 44