Gene Information

Name : cbdb_A1032 (cbdb_A1032)
Accession : YP_308055.1
Strain : Dehalococcoides sp. CBDB1
Genome accession: NC_007356
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 833548 - 834231 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGTCCAAGAAAATACTGATAGCTGATGATGAAAAAAGGATAGCGGAAATCCTGCAAGCCTATTTGGAACGTGAAGGCTT
CAGGGTGATAGCTACTTATGACGGCAAGACAGCCTTAGCCAAATTTCACGAAGAAAACCCTGACCTGATAATACTTGACC
TGATGCTGCCTGAAATATCCGGCTGGGATGTCTGCCGCGAAATCCGCAAGGAAAGCCATGTACCTATAATAATGCTTACC
GCCCGTGACGAACTCACCGACAAGCTTATAGGACTGGAAATTGGGGCGGATGATTATATGACCAAGCCCTTTGAGTCCAA
GGAACTGGTAGCCCGCGTCAAAGTCCAGCTCAGACGGTCTGAATACCCCCCCAGCCCTGATTCAGCACTGGTTATTGACC
AACTGGAGATAGATCAGGAACGGCGTCTGGTCAAGATTGATGGCAAAACTGTAGACCTGACCGCCACCGAATTTGATATA
TTGATAAGCCTGGCCGTAAGTCCGGGCCGGGTTTTTTCCCGTATGCAGATATTGGACAAGCTGGGCGAAGCTTACGAAGG
ATATGAACGCACCATAGACAGCCATATTAAAAATCTGCGAAAAAAAATAGAGCCTAACCTCGAATCCCCTACCTATATCC
TGACCGTACACGGGGTGGGCTACAAGATGAAAGACAGAGGATAA

Protein sequence : 
MSKKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEISGWDVCREIRKESHVPIIMLT
ARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEYPPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDI
LISLAVSPGRVFSRMQILDKLGEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKMKDRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-35 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 7e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_012469.1.7685629. Protein 4e-44 48
cbdb_A1032 YP_308055.1 DNA-binding response regulator AE000516.2.gene3505. Protein 4e-36 46
cbdb_A1032 YP_308055.1 DNA-binding response regulator HE999704.1.gene2815. Protein 4e-40 45
cbdb_A1032 YP_308055.1 DNA-binding response regulator AM180355.1.gene1830. Protein 3e-37 44
cbdb_A1032 YP_308055.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 2e-38 44
cbdb_A1032 YP_308055.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 3e-35 44
cbdb_A1032 YP_308055.1 DNA-binding response regulator CP000034.1.gene2186. Protein 1e-40 44
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_002695.1.916589.p Protein 1e-40 44
cbdb_A1032 YP_308055.1 DNA-binding response regulator BAC0039 Protein 1e-40 44
cbdb_A1032 YP_308055.1 DNA-binding response regulator BAC0596 Protein 5e-41 44
cbdb_A1032 YP_308055.1 DNA-binding response regulator CP001138.1.gene2239. Protein 5e-41 44
cbdb_A1032 YP_308055.1 DNA-binding response regulator AF162694.1.orf4.gene Protein 3e-32 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_014475.1.orf0.gen Protein 2e-36 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_005054.2598277.p0 Protein 2e-36 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_011595.7057856.p0 Protein 9e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_010400.5986590.p0 Protein 3e-38 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_010410.6002989.p0 Protein 9e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 3e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 4e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 4e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 4e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 4e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 3e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 4e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 3e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 4e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 4e-39 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator CP001918.1.gene3444. Protein 5e-40 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator CP004022.1.gene1676. Protein 1e-36 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator CP000647.1.gene2531. Protein 3e-40 43
cbdb_A1032 YP_308055.1 DNA-binding response regulator DQ212986.1.gene4.p01 Protein 5e-37 42
cbdb_A1032 YP_308055.1 DNA-binding response regulator CP000675.2.gene1535. Protein 8e-42 42
cbdb_A1032 YP_308055.1 DNA-binding response regulator AE015929.1.gene1106. Protein 2e-27 41
cbdb_A1032 YP_308055.1 DNA-binding response regulator EU250284.1.orf4.gene Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbdb_A1032 YP_308055.1 DNA-binding response regulator VFG1563 Protein 4e-35 42
cbdb_A1032 YP_308055.1 DNA-binding response regulator VFG1702 Protein 3e-35 42