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Name : clpC (cbdb_A70) Accession : YP_307248.1 Strain : Dehalococcoides sp. CBDB1 Genome accession: NC_007356 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 51080 - 53554 bp Length : 2475 bp Strand : + Note : - DNA sequence : ATGTCTAGCAGATTTGATAAATTTTCCGAAAGAGCGCGCCGGGTTCTTACCTATGCACAGGAAGAAGCCCAGAGCCTTAA CCATAACTACATCGGCACTGAGCATATACTGCTGGGGCTGGTGAGAGAAGAAGAAGGCGTGGCCGCCCGGGTGCTGGTGA ATATGGACGTAAACCTGGCCAAGGTACGTTCGGCTGTTGAATTTATACTGGGACGGGGTGAACACCCTGCTACCTCTGAA ACCGGTCTTACCTCCAGAGCCAAAAAGGTAATCGAGCTGGGTATTGATGAAGCCAGAAATCTGGGCCATAACTACATTGG CACTGAGCATTTGCTTTTAGGCCTTCTGCGTGAAGGTGAAGGGGCGGCTGCCGGTGTGCTTGAGAGTTTTGGGGTTACAG TTGAAAAGGTGCGCACCGAAGTAGGGCGTATCTTGAATCAGGGTTTAAACAAACCTAAAACCAGCCGGACAACCCCCAGC CGAACCCCCCAGCTGGACCAGTTAGGTTTTGACCTGACGGCCGCAGCCAAGGCTGGTAAGCTTGACCCGGTTATCGGGCG TTCCAAAGAAATAGAACGGGTAGTCCAGATTCTTTCCCGGCGTACCAAAAATAACCCTGCTCTTATAGGCGAACCTGGCG TAGGAAAAACCTCCATTGTGGAGGGGCTGGCCCAGCGCATTGTTTCGGGTGACGTACCGGAAACTCTGGAACAGAAGCAT ATAATCTCACTGGACGTGGCCTCACTGGTGGCCGGTACCAAATATCGGGGTGAATTTGAGGAACGGCTTAAGAAGGTTAT TGAAGAGATTAAAAATGCAGGAAACATAATCCTGTTTATAGACGAATTCCATACCATGGTGGGAGCCGGTGCTGCCGAGG GGGCAGTAGATGCCGCCAATATCCTCAAGCCTTCACTGGCCAGAGGCGAGGTGCAGGTTATCGGTGCGACCACTCTGGAT GATTTCCGTAAGTATGTTGAGCGTGATGCCGCACTTGAGAGACGCTTCCAGCCGGTACTGGTTGAAGAACCGGCCATAGA AGATACCCTGAGCATTCTCAGGGGTATAAAAGAACGCTATGAGGAGCATCATAAGCTTATCATCAGCGATGAAGCTATTA TCGCTGCTGCCAATATGGCTGCCAGATATATACCTGACCGCTTTTTGCCGGACAAGGCTATAGATTTGGTTGACGAAGCT GCATCACGGGTGCGGATAAAGAAACGCACCAAGCCGGTCTCTTTGAAAGAGATGAAAGCTATAGAAGACAGCTACCGCCG GGATAAAGAAGCCGCTCTGGCTACCCAGCAGTACGACTATGCTTCCGAACTCCGCGAGCGTGAGCTTCAGATAGCTGAAA AGATACGCCGCATGGAAGATGAATGGCAGACCGAACAGGCTATGGACAAGCCGGTGGTGGGCGAAGAAGATATTGCTCAG GTAGTCAGTATGTGGACAGGTGTCCCTCTGGTACAGCTTACCGGTGACGAAACCGAACGCCTTCTCCATATGGAAGATGC TTTGCACGAGCGGATTATCGGCCAGGAAGAGGCTATTGTTACCATATCCAAGGCTGTCAGGCGGGCACGGGCCGGTCTTA AAGATCCCCGTCACCCCATTGGCAACTTTGTTTTCCTTGGACCTACCGGCGTGGGTAAAACCGAATTGGCACGGGCGCTT GCCCAGTTTATGTTCGGTTCGGAAGACTCTTTGGTTCGGCTGGATATGTCCGAATTTATGGAAAAATTCGCTGTATCCCG TCTGGTGGGTGCACCCCCCGGATATGTGGGCTATGATGAGGGCGGCCAGCTGACGGAAGCTGTTCGCCGCAAGTCATATT GCCTGATACTGCTGGACGAAATAGAAAAAGCTCATCCTGACGTTTTTAATATTCTCCTTCAGATATTTGATGACGGCCAC CTGACAGATGCCAAGGGCAGGCGGGTGGACTTCAGGAATACCATTATCATCATGACCTCAAACATTGGGGCTGAACTTAT CCGCAAGGGTAGCGGGACTATCGGATTTGCCACTCAGACAGACGAATCAAAGGCCCAGCAGACCAATTTTGAGCACATGA AAGACAAGCTGCTGGGTGAGCTTAAAAAGAGTTTCCGTCCGGAGTTTTTAAACCGTATTGACAGTGTGGTGGTCTTCCAC TCGCTAAATAAAGAGCAGATTCGCAGTATTGTTGACCTGATGCTCAAGAGTGTGGTCAAGCAGATGGCTGAAAAGGGCAT CGGGCTTGAGGTGACCGAATCTGCTAAGGACTTGCTGGGCAAGAAGGGTTATGATGAGGTTTATGGTGCCAGGCCTCTGC GCCGCACTATCCAGACCATGATAGAAGACCGCTTGTCTGAAGACTTGCTGCGGGCTAAATTTAAAGCCGGGGATAAAGTA ATAGTGGATACTGCCGAAGACGAAATAATTGTCCGGCTGGCCGAACCGGCTGAGCTTAGTCAGGCTACTCCTTAA Protein sequence : MSSRFDKFSERARRVLTYAQEEAQSLNHNYIGTEHILLGLVREEEGVAARVLVNMDVNLAKVRSAVEFILGRGEHPATSE TGLTSRAKKVIELGIDEARNLGHNYIGTEHLLLGLLREGEGAAAGVLESFGVTVEKVRTEVGRILNQGLNKPKTSRTTPS RTPQLDQLGFDLTAAAKAGKLDPVIGRSKEIERVVQILSRRTKNNPALIGEPGVGKTSIVEGLAQRIVSGDVPETLEQKH IISLDVASLVAGTKYRGEFEERLKKVIEEIKNAGNIILFIDEFHTMVGAGAAEGAVDAANILKPSLARGEVQVIGATTLD DFRKYVERDAALERRFQPVLVEEPAIEDTLSILRGIKERYEEHHKLIISDEAIIAAANMAARYIPDRFLPDKAIDLVDEA ASRVRIKKRTKPVSLKEMKAIEDSYRRDKEAALATQQYDYASELRERELQIAEKIRRMEDEWQTEQAMDKPVVGEEDIAQ VVSMWTGVPLVQLTGDETERLLHMEDALHERIIGQEEAIVTISKAVRRARAGLKDPRHPIGNFVFLGPTGVGKTELARAL AQFMFGSEDSLVRLDMSEFMEKFAVSRLVGAPPGYVGYDEGGQLTEAVRRKSYCLILLDEIEKAHPDVFNILLQIFDDGH LTDAKGRRVDFRNTIIIMTSNIGAELIRKGSGTIGFATQTDESKAQQTNFEHMKDKLLGELKKSFRPEFLNRIDSVVVFH SLNKEQIRSIVDLMLKSVVKQMAEKGIGLEVTESAKDLLGKKGYDEVYGARPLRRTIQTMIEDRLSEDLLRAKFKAGDKV IVDTAEDEIIVRLAEPAELSQATP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_307248.1 | ATP-dependent Clp protease, ATP-binding subunit | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_307248.1 | ATP-dependent Clp protease, ATP-binding subunit | VFG0080 | Protein | 3e-148 | 50 |
