Gene Information

Name : cbdb_A158 (cbdb_A158)
Accession : YP_307327.1
Strain : Dehalococcoides sp. CBDB1
Genome accession: NC_007356
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 148425 - 149117 bp
Length : 693 bp
Strand : +
Note : -

DNA sequence : 
ATGCCTGAGCATAAAATATTGGTAGTTGAAGATGATGCCACTCTGCGGGAACTTTTGTGTTATAACCTTGCCAAAGAAGG
GTATCAGCTGGAATGTGCTGAAGACGGGCTGAAGGCACTTAGTGTTTACCGCCTGTTTAAGCCGGCACTGGTTATACTGG
ATGTTATGATACCGGGTATAGACGGCTTTGAACTCTGCCGCCTTATCCGCGCCGAGAGCAGTGTTCCCATACTTATGCTG
ACTGCCCGTTCAAGTGAGGCAGACAAAGTAAACGGGCTGGAAGCGGGGGCGGATGATTATCTATCCAAACCCTTTGGCAT
GAAGGAACTGCTGGCCAGAATGAAAGCTCTCCTTCGCCGCAGCCAGATGCAGAACTCCCCGGCAGAGCCGGCAGGCGGGC
TGAAGATAGGCGATTTGGAGATATTTATTGAACGCCATCTGGTAATACGGAACGGAGTTGCTCTGGATTTTTCCCCGAAA
GAATTTGACCTGTTTAGCTTTTTAGTGCAGAACCGCTATCGGGTTTTCAGCCGGGAACAACTGCTGGAAAAGGTCTGGGG
TTATGATTATCCCGGCGGTACCCGTACGGTGGATGTGCATATAAGCTGGCTTCGCCAGAAGATAGAGGCTGATCCCTCCA
AACCCCGCCACCTGATAACTGTCAGGGGAACCGGCTACAAGTTTGAGGAGTAG

Protein sequence : 
MPEHKILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGFELCRLIRAESSVPILML
TARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRRSQMQNSPAEPAGGLKIGDLEIFIERHLVIRNGVALDFSPK
EFDLFSFLVQNRYRVFSREQLLEKVWGYDYPGGTRTVDVHISWLRQKIEADPSKPRHLITVRGTGYKFEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 5e-35 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 6e-35 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_012469.1.7685629. Protein 3e-47 48
cbdb_A158 YP_307327.1 DNA-binding response regulator AE000516.2.gene3505. Protein 7e-47 48
cbdb_A158 YP_307327.1 DNA-binding response regulator HE999704.1.gene2815. Protein 5e-48 47
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 1e-47 46
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 1e-47 46
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 1e-47 46
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 8e-48 46
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 1e-47 46
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 1e-47 46
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 1e-47 46
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 1e-47 46
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 1e-47 46
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 1e-47 46
cbdb_A158 YP_307327.1 DNA-binding response regulator AE016830.1.gene1681. Protein 9e-48 45
cbdb_A158 YP_307327.1 DNA-binding response regulator NC_012469.1.7686381. Protein 8e-44 43
cbdb_A158 YP_307327.1 DNA-binding response regulator AE015929.1.gene1106. Protein 3e-30 42
cbdb_A158 YP_307327.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 9e-39 41
cbdb_A158 YP_307327.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 2e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbdb_A158 YP_307327.1 DNA-binding response regulator VFG1389 Protein 4e-35 45
cbdb_A158 YP_307327.1 DNA-binding response regulator VFG1390 Protein 1e-41 43
cbdb_A158 YP_307327.1 DNA-binding response regulator VFG1563 Protein 3e-35 43
cbdb_A158 YP_307327.1 DNA-binding response regulator VFG1702 Protein 2e-35 43
cbdb_A158 YP_307327.1 DNA-binding response regulator VFG1386 Protein 1e-35 41