Gene Information

Name : rdhD (cbdb_A1511)
Accession : YP_308450.1
Strain : Dehalococcoides sp. CBDB1
Genome accession: NC_007356
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1196848 - 1197519 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACTATTGCTAATTGAAGACGACACGAACTTAGCAAAAGTAATTACATCCGGCCTTGAAGAAAATGGCTATGTAGT
TAATTGGGAATCTGATGGCAAACTTGGGGCCGAAATGGCCTTGGCCTATACCTTTGATGTAATCATACTGGATATCATGT
TACCAGAGATTAACGGTTTCTCGGTATGCAAGAAAATTCGAACTGAAGGCAATCAAACCCCTGTAATAATGCTCACCGCT
AGATACCAAGAAGATGACAGAGTTAGAGGGCTTGACTGCGGAGCGGATGACTATTTAGTTAAACCTTTCAGCTTCCCCGA
ACTGCTTGCCCGCCTGAGAGCCTTGCTAAGACGAGCCAATAACCAGCATTCTCCTTCTATCAAGCTCAGGAAACTAACTT
TAAACACGGTGGACAGAAGAGTTTTTTATGATGACAAAGAGATAGAATTTACGGCTAAAGAGTACGGCATTCTTGAATAT
TTGGTACTGAACAAGAACTGTATAATTACCAAGAATATGATTGAAGAACATATTTGGGAATCTGAAAGTGACATTTTTTC
CAATGTCATAGAGGTGTTAATCAGCCGTATCCGCAAGAAACTGGACAACAATAATAAAAACTCTCTTATAAAAACGGTAA
AAGGGTTAGGGTATATTATTGAAGATAAATAG

Protein sequence : 
MKLLLIEDDTNLAKVITSGLEENGYVVNWESDGKLGAEMALAYTFDVIILDIMLPEINGFSVCKKIRTEGNQTPVIMLTA
RYQEDDRVRGLDCGADDYLVKPFSFPELLARLRALLRRANNQHSPSIKLRKLTLNTVDRRVFYDDKEIEFTAKEYGILEY
LVLNKNCIITKNMIEEHIWESESDIFSNVIEVLISRIRKKLDNNNKNSLIKTVKGLGYIIEDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-30 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rdhD YP_308450.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 5e-31 42
rdhD YP_308450.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 5e-31 42
rdhD YP_308450.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 5e-31 42
rdhD YP_308450.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 5e-31 42
rdhD YP_308450.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 5e-31 42
rdhD YP_308450.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 5e-31 42
rdhD YP_308450.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 5e-31 42
rdhD YP_308450.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 5e-31 42
rdhD YP_308450.1 DNA-binding response regulator BAC0083 Protein 3e-34 42
rdhD YP_308450.1 DNA-binding response regulator CP000675.2.gene1535. Protein 2e-24 42
rdhD YP_308450.1 DNA-binding response regulator AE015929.1.gene1106. Protein 1e-26 41
rdhD YP_308450.1 DNA-binding response regulator HE999704.1.gene1528. Protein 2e-30 41
rdhD YP_308450.1 DNA-binding response regulator BAC0125 Protein 1e-35 41
rdhD YP_308450.1 DNA-binding response regulator BAC0638 Protein 1e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rdhD YP_308450.1 DNA-binding response regulator VFG0596 Protein 8e-31 42