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Name : smpB (cbdb_A1479) Accession : YP_308417.1 Strain : Dehalococcoides sp. CBDB1 Genome accession: NC_007356 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1164955 - 1165473 bp Length : 519 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGCATTATGCCCGGATTGTAAGCAATCTGCGTCTGGGGTATGATATAATACATATGGCAGAATACGTAACCCTGACAAC TAACCGCAAGGCATTTCACAACTATTTCCTGGAAGAAAAATACGAAGCCGGGATAATGCTGCTGGGCACGGAGATAAAAT CCCTCCGAAGCGGCAGAGTAAACATGGGAGATGCCTATGTAAAGCCCCAGAGGGGCGAACTCTGGCTGGTAAATGCCCAT ATTTCAGCCTACGAGTGCAGCGGACATACCAGCCATGAACCAATGCGGGAACGCAAACTGCTGATGCACCGCAAGGAAAT AGCCCTGCTCATGTCAAAGGTCAAAGAAAAAGGGCTGACACTGATACCGGTTCGTATTTACCTTAAAAACGATATTGCCA AGGTAGAGCTGTCACTGGGGCGGGGTAAGAAGCTCTATGACAAAAGGGATACCGTAACCAAGCGGGACACCGAACGCGAA CTTGAGCGGGAGGTCAAATACCGCAATTTCCGCCGCTAG Protein sequence : MHYARIVSNLRLGYDIIHMAEYVTLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLVNAH ISAYECSGHTSHEPMRERKLLMHRKEIALLMSKVKEKGLTLIPVRIYLKNDIAKVELSLGRGKKLYDKRDTVTKRDTERE LEREVKYRNFRR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 4e-28 | 45 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 4e-28 | 45 |
