Gene Information

Name : smpB (cbdb_A1479)
Accession : YP_308417.1
Strain : Dehalococcoides sp. CBDB1
Genome accession: NC_007356
Putative virulence/resistance : Unknown
Product : SsrA-binding protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0691
EC number : -
Position : 1164955 - 1165473 bp
Length : 519 bp
Strand : +
Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca

DNA sequence :
ATGCATTATGCCCGGATTGTAAGCAATCTGCGTCTGGGGTATGATATAATACATATGGCAGAATACGTAACCCTGACAAC
TAACCGCAAGGCATTTCACAACTATTTCCTGGAAGAAAAATACGAAGCCGGGATAATGCTGCTGGGCACGGAGATAAAAT
CCCTCCGAAGCGGCAGAGTAAACATGGGAGATGCCTATGTAAAGCCCCAGAGGGGCGAACTCTGGCTGGTAAATGCCCAT
ATTTCAGCCTACGAGTGCAGCGGACATACCAGCCATGAACCAATGCGGGAACGCAAACTGCTGATGCACCGCAAGGAAAT
AGCCCTGCTCATGTCAAAGGTCAAAGAAAAAGGGCTGACACTGATACCGGTTCGTATTTACCTTAAAAACGATATTGCCA
AGGTAGAGCTGTCACTGGGGCGGGGTAAGAAGCTCTATGACAAAAGGGATACCGTAACCAAGCGGGACACCGAACGCGAA
CTTGAGCGGGAGGTCAAATACCGCAATTTCCGCCGCTAG

Protein sequence :
MHYARIVSNLRLGYDIIHMAEYVTLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLVNAH
ISAYECSGHTSHEPMRERKLLMHRKEIALLMSKVKEKGLTLIPVRIYLKNDIAKVELSLGRGKKLYDKRDTVTKRDTERE
LEREVKYRNFRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AET14351.1 SsrA-binding protein Not tested SaPI68111 Protein 4e-28 45
smpB YP_001800894.1 SsrA-binding protein Not tested Not named Protein 4e-28 45