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Name : clpA (cbdb_A1374) Accession : YP_308336.1 Strain : Dehalococcoides sp. CBDB1 Genome accession: NC_007356 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1092779 - 1095217 bp Length : 2439 bp Strand : + Note : - DNA sequence : ATGAGACAGGAAAAATTTACCGAACAAGCCCAGGAAGCCCTCAGCGCTTCACAGATGCTGGTACAGGAATATCAGCACAG CCAATGGGATGTTGAACATGTACTGCTGGCTCTTGTCCGTCAGGAAAAAGGGCTGGTGGGTGAAATAATCAAAGAGCTGA AACTAAGCTCCGAGGAAATAACCAAACAGCTGGTAGAGGCTTTGAAACGTTCGCCTAAAGCAGTAGGCGGCAATGTTCAG ATATACCCCACCCCCCGCATTATCAGCCTGCTGCAAACCGCCAACAACGAAGCAGACCGCCTGCGGGATGAATTCATAGG CACGGAACATCTGCTGGTAGCTATAGCAGGAGATACCCAGGGAGAATCTGCCCGCATCCTGAAGCATTTTGGTATTGATC AGGAAAAAGTCTATTCCGCCCTCCAGAAAATAAGGGGCGGACACCGGGTGACTGATGCCAGAGCCGAAAGCAAATACAGG GCACTGGCCAAATACAGCCGTGACCTTACCGAACTGGCTAAACAGGGCAAGATAGACCCGGTAATAGGCCGTGATCAGGA AATCCGCCGGGTTATGCAGATACTCTCCCGCCGCACCAAGAACAACCCTGTGATAGTGGGGGAAGCAGGTGTAGGCAAAA CTGCCATTGCCGAAGGGGTTGCCCAAAAAATTGCGGATAACGACGTACCCGAATCCCTGCGTGACCGCAAGGTAATGGCA CTGGATATGGGTGCATTGGTTGCCGGAAGCAAGTTCCGGGGGGAGTTTGAAGAACGCCTCAAAGCCGTAATGGACGAAGT GCGCCAATCTGCCGGTGAAATTATTTTGTTTATAGATGAAATCCATACCGTAGTCGGGGCAGGGGCAGCCGAGGGGGCTA TTGATGCCTCAAACATGCTGAAGCCGGCCTTATCCAGGGGTGAACTCCAGACTATTGGGGCTACCACTCTGGATGACTAC CGCAAATATATTGAAAAAGACACCGCTCTGGAGCGCCGCTTCCAGCCGGTATATGTGGAAGAACCTACAGTGGAACAAAC TATTGAGATACTAAAGGGTATCAGACCCAAGTACGAAACCCACCACAAGCTGAAGATAAGTGACGCCGCTCTGGAGGCAG CCGTCAGGCTGTCCAGCCGTTACATAACTGAACGCCAACTGCCCGATAAGGCTATAGACCTTATTGACGAAGCCGCAAGC AAACTCCGTCTGGATAGCGAAAGCGCCCCGCCGGAAGTAAAGAAGCTGGAAAATGAATTTCGTCAGGCAGGCATTGAGGA AGAAGCCGCCTCCCAACTGCAGGATTATGAAAAAGCGGCTGAACTCAAGGCTGAAAAAATACGCTTGGAAGAAAAGTTCA ACACTGCCCGTGAGGAATGGCTGAAACAGGAGAAAATAGCCGAAGAAGTAACTGACAAACAGATAACCGAGCTGGTTTCC TCTATGACCGGCATACCTGTCAGCCAGATGCTTGAAGGCGAGGCTTCCAAACTGCTGAATATGGAAGAGCGTATCCACGA GCGGATGGTAGACCAGGAAGAAGCCGTAAAAGCCGTTGCCGAAGCTATCCGCCGCAGCAGGGCAGGTCTTAAAGACCCGC GCCGCCCTATAGGCAGTTTCCTGTTTTTAGGCCCGACCGGGGTGGGCAAAACAGAACTGGCCCGAAGTCTGGCCTGGTTT TTGTTTGACGATGAAACCGCCATGGTAAGGCTGGATATGTCCGAATATCAGGAAAAGCACACCGTATCCCGTCTGGTGGG GGCACCTCCCGGATATGTGGGCTACGATGAAGGCGGGCAACTAACCGAATTGGTTCGCCGCCGCCCTTATCGGGTTATCC TGCTGGATGAAATTGAAAAAGCCCATCCAGATGTCTACAATTCCTTGCTCCAGCTATTGGATGACGGCCGTCTGACAGAC GGGCAGGGCAGAACAGTGGACTTTAAAAATACGGTCATTATAATGACCTCTAACGCAGGCATAGAAACCATAAAACGCGA ATCTGCTCTGGGTTTCGCAGTCAGAACCGATGACACCAAAACCCGCCATGACAGCTATGAACGCATGAAAGACAAGGTCA TGACCGAAGTCAAAAAGACCTTCCGTCCGGAGTTCATCAACCGGGTAGATGAAATAATTGTCTTCCACGAGCTGGCAGAG GAACAGATACGCCAGATAGTAGATTTCATGATAAAAGACGTTTCCAAACGTCTTGAGGAACGCAAACTCAAACTGGAGCT GACCGACGAGGCTAAGGGCTGGCTGGCCAAGGTGGGTTATGACCCGGCTTTCGGTGCCAGACCCCTTCGCAGAGCCATTG AAAGATACGTGGAAAGCCCGCTGGCGGGCAAGCTGCTTCGCAATGAGTTTAGTGAAAATGCTACAATACTGGTGGACAAG GCGGATGAAGCTTTGAGTTTTAGCCAAAAGGCCGCCTGA Protein sequence : MRQEKFTEQAQEALSASQMLVQEYQHSQWDVEHVLLALVRQEKGLVGEIIKELKLSSEEITKQLVEALKRSPKAVGGNVQ IYPTPRIISLLQTANNEADRLRDEFIGTEHLLVAIAGDTQGESARILKHFGIDQEKVYSALQKIRGGHRVTDARAESKYR ALAKYSRDLTELAKQGKIDPVIGRDQEIRRVMQILSRRTKNNPVIVGEAGVGKTAIAEGVAQKIADNDVPESLRDRKVMA LDMGALVAGSKFRGEFEERLKAVMDEVRQSAGEIILFIDEIHTVVGAGAAEGAIDASNMLKPALSRGELQTIGATTLDDY RKYIEKDTALERRFQPVYVEEPTVEQTIEILKGIRPKYETHHKLKISDAALEAAVRLSSRYITERQLPDKAIDLIDEAAS KLRLDSESAPPEVKKLENEFRQAGIEEEAASQLQDYEKAAELKAEKIRLEEKFNTAREEWLKQEKIAEEVTDKQITELVS SMTGIPVSQMLEGEASKLLNMEERIHERMVDQEEAVKAVAEAIRRSRAGLKDPRRPIGSFLFLGPTGVGKTELARSLAWF LFDDETAMVRLDMSEYQEKHTVSRLVGAPPGYVGYDEGGQLTELVRRRPYRVILLDEIEKAHPDVYNSLLQLLDDGRLTD GQGRTVDFKNTVIIMTSNAGIETIKRESALGFAVRTDDTKTRHDSYERMKDKVMTEVKKTFRPEFINRVDEIIVFHELAE EQIRQIVDFMIKDVSKRLEERKLKLELTDEAKGWLAKVGYDPAFGARPLRRAIERYVESPLAGKLLRNEFSENATILVDK ADEALSFSQKAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpA | YP_308336.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 55 |
| clpA | YP_308336.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0080 | Protein | 7e-155 | 50 |
