Gene Information

Name : rph (cbdb_A1225)
Accession : YP_308212.1
Strain : Dehalococcoides sp. CBDB1
Genome accession: NC_007356
Putative virulence/resistance : Unknown
Product : ribonuclease PH
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0689
EC number : 2.7.7.56
Position : 985438 - 986163 bp
Length : 726 bp
Strand : -
Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs

DNA sequence :
ATGCAAAGAGGTGATGGCCGCAACTTTAACCAGCTAAGGCCGATAACAATTACACCCGGTTTCCAGAGCTTTGCCGAGGG
TTCGGTTTTGATAGAGCAGGGTAAGACAAGGGTAATCTGTTCGGTCAGTATGGAAGACAGAGTTCCCCAGTTTTTGCGTA
ATAGCGGTACAGGCTGGGTCACGGCTGAATATTCCATGTTGCCCCGTTCCACGGTTACCCGTACCCAAAGAGATTCGTCT
GCAGGCAAGATATCCGGCAGGAGTCAGGAAATACAGCGCCTTATAGGCCGCTCCCTGCGTTCCTGTGTAGATATGGCGGC
TTTGGGCGAGAGGTCTTTTATTGTAGACTGTGACGTTATTCAGGCAGATGCCGGCACCCGCACCGCTTCCATAACCGGTT
CTTATATAGCCCTGTATCTGGCGTTTAAAAAAATGGTAGATATGGGTATTCTTTCCAAAATGCCCTTTACTTCTCAGGTA
GCGGCGGTCAGTGTCAGTATTTTTAAAGGCAATATTGTGCTTGACCCCTGTTATGACGAAGATTTTCAGGCTGAAGTGGA
TTTTAATCTGGTCATGAATGACCGGGGTGAGTTTGTGGAAATACAGGGTACGGCTGAAGGCAAGGCCTTCTCCCGTGATA
CCCTTGATCAGGTACTCAAACTGGGCGAAGCCGGTATCAGACAGCTTTTTGATATTCAGAAGGGTATTACCCAGCCTCAG
CTTTAG

Protein sequence :
MQRGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDRVPQFLRNSGTGWVTAEYSMLPRSTVTRTQRDSS
AGKISGRSQEIQRLIGRSLRSCVDMAALGERSFIVDCDVIQADAGTRTASITGSYIALYLAFKKMVDMGILSKMPFTSQV
AAVSVSIFKGNIVLDPCYDEDFQAEVDFNLVMNDRGEFVEIQGTAEGKAFSRDTLDQVLKLGEAGIRQLFDIQKGITQPQ
L

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rph YP_001800860.1 ribonuclease PH Not tested Not named Protein 4e-56 52