Gene Information

Name : SSP2073 (SSP2073)
Accession : YP_302163.1
Strain : Staphylococcus saprophyticus ATCC 15305
Genome accession: NC_007350
Putative virulence/resistance : Virulence
Product : cobalamin Fe3+-siderophores ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2139310 - 2140113 bp
Length : 804 bp
Strand : -
Note : similar to gi|57285674|gb|AAW37768.1| [Staphylococcus aureus subsp. aureus COL], percent identity 84 in 265 aa, BLASTP E(): e-128

DNA sequence : 
ATGAATCGCTTAAAAGGAGAACAGGTCACTATAGGTTATGGAGATAATGTCATCGTCAATAATTTAGATGTACACATACC
AGATGGAAAAATTACTTCTATTATAGGACCAAACGGTTGTGGGAAATCAACATTACTTAAAGCGTTATCACGGTTATTAC
CGGTTAAAAATGGAGAAATTAAGTTAGATGGTGAAAACATACATTCACATTCTACGAAAGAAATTGCAAAGAAAATAGCG
ATTTTACCTCAATCACCAGAAGTTGCTGATGGATTGACAGTCGGTGAGCTTGTATCATATGGTCGCTTTCCGCATCAAAA
AGGCTTTGGTCGTCTGTCTGCAGAAGACAAAAAGGAAATTGATTGGGCAATGCGCGTAACTGGTACGTATGATTTTAAAT
TGCGTTCTATCAATGACTTGAGTGGTGGACAACGTCAGCGTGTATGGATAGCTATGGCTTTAGCTCAACGTACAGATATT
ATTTTCTTAGACGAACCAACAACATATCTAGATATTTCTCACCAATTAGAAATCTTGGAATTGATTACGCAATTAAATAA
AGAACAGGGTTGTACAATTATCATGGTTTTACATGATATAAACCAGGCTGTCCGTTTTTCAGATCATTTAATCACTATGA
AAAATGGCGATATTATTGCGACTGGTGAGACTGAAGAAGTATTAACGAAAGATATTTTAGAAAAAGTGTTTAATATTGAT
GTAGAGATTAGTACAGACCCAAGAACTGGAAAACCTATGCTAGTAACATACGATTTATGCAGAAAAAGTTATTCTGAGGT
TTAG

Protein sequence : 
MNRLKGEQVTIGYGDNVIVNNLDVHIPDGKITSIIGPNGCGKSTLLKALSRLLPVKNGEIKLDGENIHSHSTKEIAKKIA
ILPQSPEVADGLTVGELVSYGRFPHQKGFGRLSAEDKKEIDWAMRVTGTYDFKLRSINDLSGGQRQRVWIAMALAQRTDI
IFLDEPTTYLDISHQLEILELITQLNKEQGCTIIMVLHDINQAVRFSDHLITMKNGDIIATGETEEVLTKDILEKVFNID
VEISTDPRTGKPMLVTYDLCRKSYSEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-62 50
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-55 50
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-55 50
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-55 50
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-55 50
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-59 48
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-59 48
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-59 48
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-59 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-55 47
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-57 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-57 47
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-58 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSP2073 YP_302163.1 cobalamin Fe3+-siderophores ABC transporter ATPase BAC0164 Protein 1e-55 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSP2073 YP_302163.1 cobalamin Fe3+-siderophores ABC transporter ATPase VFG0925 Protein 1e-63 50
SSP2073 YP_302163.1 cobalamin Fe3+-siderophores ABC transporter ATPase VFG1042 Protein 1e-55 47