Gene Information

Name : fliP (Reut_B5881)
Accession : YP_300068.1
Strain :
Genome accession: NC_007348
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2722354 - 2723151 bp
Length : 798 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAACACCGAGCGCGCCGCCACACCGCGGCGCAAGACGCAATTCCGTGCGCTGGCCATCGGCAGCGCGCTACTGGTGGC
CGTGCTGGCACTGGCGCTCGCGCCGGCACCCGTGCTGGCACAGGCACTGCCCGGCGTGACCAGCAAACCCGGCCCGGGGG
GCGGCCAGATCTGGTCGCTGTCGATCCAGACGCTGGTCCTGCTGACTTCGCTAAGCTTCCTGCCGGCGGCCGTGCTGATG
ATGACCGGCTTCACCCGCATCGTCATCGTGCTGGGCCTGCTGCGCAACGCGCTCGGCACGGCATCGTCGCCGCCGAACCA
GGTGCTGGTGGGCTTGTCGCTGTTCCTGACATTCTTCGTGATGAGCCCCGTGCTCGACCGGGTCTACAACGACGCGTACA
AGCCGCTGTCCGAAAACAGGATCAGCCTCGAGACCGCGATGGCCAAGGCAGCCGAGCCGCTCAAGGGTTTCATGCTCAAG
CAGACCCGCGAGAAGGATCTCGCCATGTTCGCGCAGATGGCAAAGGCGCCTGAAATGCAGGGCCCCGAAGAGGTGCCGAT
GAGCATCCTGGTTCCCGCGTTCGTCACGAGCGAACTCAAGACCGCATTCCAGATCGGCTTCACCATCTTTATTCCGTTCC
TGATCATCGACCTCGTCGTCGCCAGCGTGCTGATGGCGATGGGCATGATGATGGTGCCGCCCGCCACGATCTCGCTGCCG
TTCAAGCTGATGCTGTTCGTGCTCGTGGATGGCTGGCAGCTGCTGCTGGGCTCGCTCGCGCAGAGCTTCATGAATTGA

Protein sequence : 
MNTERAATPRRKTQFRALAIGSALLVAVLALALAPAPVLAQALPGVTSKPGPGGGQIWSLSIQTLVLLTSLSFLPAAVLM
MTGFTRIVIVLGLLRNALGTASSPPNQVLVGLSLFLTFFVMSPVLDRVYNDAYKPLSENRISLETAMAKAAEPLKGFMLK
QTREKDLAMFAQMAKAPEMQGPEEVPMSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPATISLP
FKLMLFVLVDGWQLLLGSLAQSFMN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 5e-28 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 5e-28 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 5e-28 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 7e-28 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-31 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-31 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-31 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-31 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-31 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-31 43
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-30 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-30 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-32 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-33 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-21 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 9e-22 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-33 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-33 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-33 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-34 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-34 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-21 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 8e-33 41
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-30 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-29 41
escR AAC31528.1 L0049 Virulence LEE Protein 3e-30 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 4e-30 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-30 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 4e-30 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 4e-30 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 4e-30 41
escR AAK26700.1 EscR Virulence LEE Protein 3e-30 41
escR AAL57527.1 EscR Virulence LEE Protein 3e-30 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_300068.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-78 76
fliP YP_300068.1 flagellar biosynthesis protein FliP VFG2338 Protein 5e-81 75
fliP YP_300068.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-63 60
fliP YP_300068.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-59 56
fliP YP_300068.1 flagellar biosynthesis protein FliP VFG0519 Protein 5e-32 43
fliP YP_300068.1 flagellar biosynthesis protein FliP VFG0394 Protein 4e-30 42
fliP YP_300068.1 flagellar biosynthesis protein FliP VFG0827 Protein 2e-30 41