Gene Information

Name : PMN2A_0039 (PMN2A_0039)
Accession : YP_291234.1
Strain : Prochlorococcus marinus NATL2A
Genome accession: NC_007335
Putative virulence/resistance : Virulence
Product : ABC-type Mn2+/Zn2+ transport system permease components
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 592758 - 593630 bp
Length : 873 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTGAATTTCTAATTTCCATTACGCCAATTGATTGGCTATTGGATCCATTAACTCATGACTTCATGAGAAGAGCTTT
AATGGTTAGCGCACTAGTGGGAGGGGTTTGCGGACTTTTATCTTGTTATATGACATTAAAAGGTTGGGCATTAATGGGTG
ACGCGGTTTCTCATGCGGTTATGCCTGGAGTAGTTGTTGCTTATGCATTAGGGCTCCCTTTTTCCTTATGTGCTTTTGTT
TTTGGCGTTGGTTCAGTTGCTTTGATTGGATTTGTTAAACAGAAATCTAGAATCAAGGAAGATACAGTAATAGGACTTGT
TTTTACTGGCTTTTTTGCATTAGGCCTTGTATTGGTTTCAAAAATAAAAAGTAATATTGATCTAATGCAAATACTTTTTG
GAAGCCCTCTTGGTATTTCTCGTTCAGATGTTAACCAGACTTTAATAATTTCGTTTATTGTTATATCTATTTTGCTTATA
TTTAGAAAAGATTTAATGCTTTATTGTTTTGATGCTAAGCATGCTAGATCTATAGGAATAAATACAGGCATTCTTCATTA
TTTATTATTAACTTTATTGTCATTATCTGCAGTAGTAGGATTGCAAACGGTAGGTATTATTCTTGTAGTAGCAATGTTAA
TAACTCCTGGTGCAACGGCATATTTACTCACAGATCGTTTTGATAGAATGACGATATTAGCAGTAATTAGCAGTTCTTTC
TCAAGTATTTTAGGAGTTTATATAAGTTATTGGTCAGATATTGAAACAGGAGGATCTATTGTTTTAGTGCAAACATTAAT
CTTTTTAATAGCTTTCTTATTCGCTCCAAGATATGGAATATTTAAAAACCAAACTCTTATAAATAATGATTAA

Protein sequence : 
MSEFLISITPIDWLLDPLTHDFMRRALMVSALVGGVCGLLSCYMTLKGWALMGDAVSHAVMPGVVVAYALGLPFSLCAFV
FGVGSVALIGFVKQKSRIKEDTVIGLVFTGFFALGLVLVSKIKSNIDLMQILFGSPLGISRSDVNQTLIISFIVISILLI
FRKDLMLYCFDAKHARSIGINTGILHYLLLTLLSLSAVVGLQTVGIILVVAMLITPGATAYLLTDRFDRMTILAVISSSF
SSILGVYISYWSDIETGGSIVLVQTLIFLIAFLFAPRYGIFKNQTLINND

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 6e-56 50
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-56 50
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-56 50
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-56 50
sitC NP_461784.1 permease Virulence SPI-1 Protein 7e-56 50
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-45 47
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-45 47
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-45 47
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-45 47
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-45 47
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 1e-40 44
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 2e-40 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PMN2A_0039 YP_291234.1 ABC-type Mn2+/Zn2+ transport system permease components BAC0351 Protein 3e-56 50
PMN2A_0039 YP_291234.1 ABC-type Mn2+/Zn2+ transport system permease components BAC0442 Protein 2e-52 49
PMN2A_0039 YP_291234.1 ABC-type Mn2+/Zn2+ transport system permease components BAC0441 Protein 6e-48 48
PMN2A_0039 YP_291234.1 ABC-type Mn2+/Zn2+ transport system permease components BAC0352 Protein 6e-46 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PMN2A_0039 YP_291234.1 ABC-type Mn2+/Zn2+ transport system permease components VFG0527 Protein 3e-56 50
PMN2A_0039 YP_291234.1 ABC-type Mn2+/Zn2+ transport system permease components VFG0528 Protein 6e-46 47