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Name : smpB (PMN2A_1193) Accession : YP_292386.1 Strain : Prochlorococcus marinus NATL2A Genome accession: NC_007335 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1682562 - 1683059 bp Length : 498 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGAGCAAAAAAGGAAAGAAACAATCCAAAAACAATTCCTCAGTTGATGGAAATCGTCGCTTAGCAGAAAATCGACAAGC AAGATATGAATATGAAATCCTAGAAACACTTGAAACTGGATTAGAGCTTCTTGGAACAGAAGTTAAATCAATTAGAGCTG GAAAAGTAAATTTAAAAGATGGATTTTGCCTAATCAAAAAAGATCAAATTCAACTTCATAATGTTCATATATCGCCTCAT AATCATGCCGGTAAATTTTTCAATCACGAACCTCTGAGAATCAAAAGACTTCTTGCACATCGAAAAGAAATCGAGAAATT AAAAATAAGTTTAGAAAGAAAAGGTTTAACAATAATCCCTTTAAGTCTTTATCTAAAAGGCTCATGGATCAAATTAAAAA TAGGAGTCGGTAAAGGAAGGAAGATTCATGACAAAAGAGATCGAGAGAAGATCAATGACTCCAAAAGAGATGTAGCTAAT GCTCTAAAACGTTTTTAA Protein sequence : MSKKGKKQSKNNSSVDGNRRLAENRQARYEYEILETLETGLELLGTEVKSIRAGKVNLKDGFCLIKKDQIQLHNVHISPH NHAGKFFNHEPLRIKRLLAHRKEIEKLKISLERKGLTIIPLSLYLKGSWIKLKIGVGKGRKIHDKRDREKINDSKRDVAN ALKRF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-19 | 47 |
