Gene Information

Name : Tfu_0336 (Tfu_0336)
Accession : YP_288397.1
Strain : Thermobifida fusca YX
Genome accession: NC_007333
Putative virulence/resistance : Virulence
Product : ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 377892 - 378713 bp
Length : 822 bp
Strand : -
Note : -

DNA sequence : 
ATGTCCCAGCCCACTTCCTCCCGGTTGCGGGGAGAGAACCTGACCCTGGCCTACGACCAGCGCGTCATCTCCCGGAACCT
CGAAGTGGCGATCCCCGACCACTCGTTCACCGTGATCGTCGGCCCTAACGCGTGCGGCAAGTCCACTCTGCTGCGCGCCC
TGTCGCGGATGATCCGTCCGACGACGGGCGCGGTGTACTTGGACGGCAAGCTCATCCACTCGTATTCGTCGAAAGAGGTG
GCACGGCGGCTGGGACTGCTGCCGCAGACGTCGATCGCGCCGGACGGGATCACCGTGGTCGACCTGGTCTCCCGGGGCCG
CTACCCGCACCAGCGGTTTTTGCGGCAGTGGTCGCGGGAGGACGAACGGGTGGTCGCCGAGGCGATGGCGGCGACCCGGG
TCTCCGACCTCGCCGACCGGCTCGTAGACGAGCTGTCCGGGGGCCAGCGGCAGCGCGTGTGGTTGGCGATGGTGCTGGCG
CAACAGACCCCGCTGCTGCTGTTGGATGAGCCGACCACCTTCTTGGACATCGCCCACCAGCTGGACATGCTGGACCTCTG
CGCTGAGCTACACCAGGAGCGCGGGCACACGCTGGTGGCGGTGCTGCACGACCTGAACCAGGCCTGCCGGTACGCCACCC
ATCTGATCGCGATGAAGGACGGCGCAGTGGTCGCCCAAGGGGACCCGCAGGAGATCGTCACCGCGGAGCTGGTGGCGGAG
GTCTTCGGGCTGCCGTGCCAGATCATCCCCGACCCGGAGACCGGAACCCCCATGGTGGTGCCGAGCGACCGGCGGAAGCG
GGCCGGGCGGAAGGCTGCGTGA

Protein sequence : 
MSQPTSSRLRGENLTLAYDQRVISRNLEVAIPDHSFTVIVGPNACGKSTLLRALSRMIRPTTGAVYLDGKLIHSYSSKEV
ARRLGLLPQTSIAPDGITVVDLVSRGRYPHQRFLRQWSREDERVVAEAMAATRVSDLADRLVDELSGGQRQRVWLAMVLA
QQTPLLLLDEPTTFLDIAHQLDMLDLCAELHQERGHTLVAVLHDLNQACRYATHLIAMKDGAVVAQGDPQEIVTAELVAE
VFGLPCQIIPDPETGTPMVVPSDRRKRAGRKAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 8e-69 55
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 7e-69 55
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-69 55
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-69 55
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 9e-55 50
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-62 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 6e-64 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 6e-64 47
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-51 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tfu_0336 YP_288397.1 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components BAC0164 Protein 6e-55 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tfu_0336 YP_288397.1 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components VFG0925 Protein 2e-81 60
Tfu_0336 YP_288397.1 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components VFG1042 Protein 5e-55 50