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Name : lysS (Tfu_2881) Accession : YP_290937.1 Strain : Thermobifida fusca YX Genome accession: NC_007333 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 3394865 - 3396355 bp Length : 1491 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGAGTGAAGTACTGGATGATCTGCCGGAACAGATGCGGGTTCGCCGCGAGAAGCTGGACCGACTGCGTCGGGAGGGTGT CGACCCCTACCCGGTGACCTTCCCGCGCACGACGACGATCGCAGAGGTCCGGGCGAAACACGGCGATCTCGCTCCGGACG TCTACACCGGGGAACGCGTGGCCCTGACCGGGCGGGTCATGCTGTATCGGACCGGCGGCAAACTCTGCTTCGCCACGATC CGGGACGCGTCCGGGGACATCCAGGTCATGCTCTCCCTGGACAGGGTGGGCGCCGAGCGTTTGGCGGCGTGGAAGAGCGA CGTCGACCTGGGCGACCACATCGGTGTCGAAGGGGAAGTGATCACTTCTCGGCGAGGCGAGTTGTCGATCCTCGCGGACA CCTGGACGCTGACCTCCAAGTGCCTGCGCCCGCTGCCGGACAAGCACAAGGGGCTGACCGACCCTGAGGCACGGGTGCGC CAGCGCTACGTGGACCTTATCGTCAACCCCGAGTCGCGGGAGATGGTGATGCGCCGCGCCCGCACGGTGCGTGCGCTGCG CGACGGGCTGCACAACCGCGGCTACATCGAGGTTGAGACGCCGATGCTGCAGCAGGTGCACGGCGGGGCGACGGCACGCC CCTTCGTCACCCACATCAACGCCTACGACCTCGACCTCTACCTGCGCATCGCCCCCGAACTGTACTTGAAGCGGATGGTG GTCGGCGGGGTTGAGAAGGTCTTCGAAATCAACCGGAACTTCCGGAACGAGGGCGCGGACTCCACGCACAACCCCGAGTT CACGATGCTGGAGTTCTACCAGGCCTACGCGGACTACAACGTGATGGCCGACATCACCCGCGAACTCATCCAGGAAGCCG CCGTCGCAGTGTTCGGCAGCACGGTGGTCCAGCGGGGCGACACAGAGGTCGACTTGGGCGGCGAGTGGCCGCAGATCACC TTGTACGGCGCGGTCTCTGAAGCGCTGGGCGAAGAAGTCACTCCGCGGACCCCGGTGGAGACGCTGCGGAAGCTGGCGGA TGCGCGCGGTGTCGAATGGAACCCGGAGTGGGGTCCGGGCAAGCTCGTCGAGCACCTTTTCGAGGAGTTGGTCCAAGACA GCCTGGTGCAGCCGACTTTTGTCCGGGACTACCCGCTTGAAACCAGCCCGCTGACCCGCCAGCACCGTGAAGACCCGCTG CTCACCGAGAAGTGGGATCTCATCGGATTCGGTATGGAGTTGGGCACCGGATATTCCGAGTTGATTGATCCGGTGGAGCA GCGCCGCCGCTTGACTGAGCAGTCTCTGCTGGCTGCCGGGGGCGATCCCGAGGCAATGCAGTTGGACGAGGATTTTCTGC GCGCCTTGGAGTACGCCATGCCGCCTACCGGCGGTGTCGGTGTGGGCGTCGACCGGCTGTTGATGGCCTTTACCGGAAAG AACATTCGCGAGACGATCCTGTTCCCATTGGTCCGACAGGAACAGAGATAA Protein sequence : MSEVLDDLPEQMRVRREKLDRLRREGVDPYPVTFPRTTTIAEVRAKHGDLAPDVYTGERVALTGRVMLYRTGGKLCFATI RDASGDIQVMLSLDRVGAERLAAWKSDVDLGDHIGVEGEVITSRRGELSILADTWTLTSKCLRPLPDKHKGLTDPEARVR QRYVDLIVNPESREMVMRRARTVRALRDGLHNRGYIEVETPMLQQVHGGATARPFVTHINAYDLDLYLRIAPELYLKRMV VGGVEKVFEINRNFRNEGADSTHNPEFTMLEFYQAYADYNVMADITRELIQEAAVAVFGSTVVQRGDTEVDLGGEWPQIT LYGAVSEALGEEVTPRTPVETLRKLADARGVEWNPEWGPGKLVEHLFEELVQDSLVQPTFVRDYPLETSPLTRQHREDPL LTEKWDLIGFGMELGTGYSELIDPVEQRRRLTEQSLLAAGGDPEAMQLDEDFLRALEYAMPPTGGVGVGVDRLLMAFTGK NIRETILFPLVRQEQR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-122 | 54 |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-87 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_290937.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-87 | 44 |
