Gene Information

Name : Tfu_1663 (Tfu_1663)
Accession : YP_289721.1
Strain : Thermobifida fusca YX
Genome accession: NC_007333
Putative virulence/resistance : Virulence
Product : ABC transporter substrate-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1934214 - 1935149 bp
Length : 936 bp
Strand : -
Note : -

DNA sequence : 
GTGGCGAACTTTAAAGATTGTCGTACCTTAAAAACCGGTGTGCTCGGTATTGTCCTCGCAGCACTTGCTGCGTGCGGCAC
CTCACCAGCCACACAGCTCGACGACGACCGGCCTGTCGTGCTCACCACCTTCACCGTCCTCGCTGACATGGCGCGCAACG
TCGCCGGGGAGCACGCCCGCGTGGAATCCATCACCCGGGTCGGTGCGGAGATCCACGAATATGAGCCCACCCCCAGCGAC
CTGGTCCGTGCCCAGGCCGCTGACCTCCTCCTCGCCAACGGCATGAACCTGGAACTGTGGTTTGAGCAGTTCACCGACCC
GCTCGACGTCCCCACCCGCGTGGTCACCGAGGGAGTCGAGACCATCCCTGTCGCCTCCGGGGACTATGCGGGCCACCCCA
ACCCGCACGCGTGGATGTCCCCGGACGAAGCCCTCGTCTACGTCGACAACATCCGGGATGCGCTCAGCGAACTCGACCCG
GACCATGCCGCCGACTATGCGGCCAACGCCGAGGCCTACCAGGCTGAGATCACCGAGATCGGCGAGTTCCTCCGTGCTGA
ACTCGCCACAGTGCCCGAAGAACAGCGGGTCCTGGTCACCTGCGAGGGCGCATTCTCCTACCTGGCACGCGACACAGGGC
TAACCGAGAAGTACCTGTGGCCGATGAACGCTGAAGGGGAAGGCACCCCCCAGCAGATCGCCTCCGTGGTGGAGTTCGTC
CGTGAGCACAACGTCCCCGCGGTCTTCTGTGAAAGTACCGTCAACGACAGCGCCCAGCGCCAGGTCGCCCGCGAGACCGG
TGCCGTCCTCGGCGAACCCTTGTACGTGGATTCGCTCTCCGACGCAAACGGCCCAGTCCCCACCTACCTGGACCTGCTGC
GCCACGACGCGGAAGCCATCGTCGCCGGACTCACCGGACAGGGAGGCCGCTCGTGA

Protein sequence : 
MANFKDCRTLKTGVLGIVLAALAACGTSPATQLDDDRPVVLTTFTVLADMARNVAGEHARVESITRVGAEIHEYEPTPSD
LVRAQAADLLLANGMNLELWFEQFTDPLDVPTRVVTEGVETIPVASGDYAGHPNPHAWMSPDEALVYVDNIRDALSELDP
DHAADYAANAEAYQAEITEIGEFLRAELATVPEEQRVLVTCEGAFSYLARDTGLTEKYLWPMNAEGEGTPQQIASVVEFV
REHNVPAVFCESTVNDSAQRQVARETGAVLGEPLYVDSLSDANGPVPTYLDLLRHDAEAIVAGLTGQGGRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 4e-73 60
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-73 60
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-73 60
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 4e-73 60
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 4e-73 60

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tfu_1663 YP_289721.1 ABC transporter substrate-binding protein BAC0349 Protein 2e-73 60
Tfu_1663 YP_289721.1 ABC transporter substrate-binding protein BAC0439 Protein 8e-69 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tfu_1663 YP_289721.1 ABC transporter substrate-binding protein VFG0525 Protein 2e-73 60