Gene Information

Name : Tfu_1330 (Tfu_1330)
Accession : YP_289391.1
Strain : Thermobifida fusca YX
Genome accession: NC_007333
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1541032 - 1541691 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence : 
ATGGCACGCATCCTGATCGTCGAAGATGAAGACCGCATCGCCTCGTTCGTCCGCAAAGGGTTGAACGCGAACGGGTTCAC
CAGCACCGTGGTGGACCGCGCGGGCGCCGCCATCGACTATGCGCTCACCGGCAATTTCGACCTCATGGTTCTTGACCTGG
GCCTGCCGGACGCTGACGGGTTCACGGTGCTGCGCCGGCTGCGTGAGGAAGGCAGCCGGCTGCCGATCATCATCCTCACT
GCTCGCGACAGTGTGCGGGACACGGTGACCGGTCTGGAAACCGGTGCCGACGACTACATGACTAAACCGTTCCGCTTCGA
AGAACTCCTTGCCCGTATCCGGTTGCGTATGCGGAGCGCGCACAACGCGGAAACAACCGTGCTCCACGCCGGTGACCTCG
CCCTTGATCTGCGCACCCGCCGCGCCTCCACCCCTGAGGCCACTGTCGACTTGACGGCCCGCGAGTTCGCCCTGTTGGAA
CTGTTCCTCCGCCACCCAGGCCAGGTGCTGTCCCGCCAGCAGATTCTCTCCCACGTGTGGGGCTACGACTACGACCCCGG
CTCCAACGTGGTCGACGTGTTCATCCGCGCGTTGCGGAAGAAGATCGGCGCCCACCGGATCGAAACCCTCCGCGGCATGG
GATACCGGCTTGGCGGTTGA

Protein sequence : 
MARILIVEDEDRIASFVRKGLNANGFTSTVVDRAGAAIDYALTGNFDLMVLDLGLPDADGFTVLRRLREEGSRLPIIILT
ARDSVRDTVTGLETGADDYMTKPFRFEELLARIRLRMRSAHNAETTVLHAGDLALDLRTRRASTPEATVDLTAREFALLE
LFLRHPGQVLSRQQILSHVWGYDYDPGSNVVDVFIRALRKKIGAHRIETLRGMGYRLGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-36 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tfu_1330 YP_289391.1 response regulator receiver BAC0197 Protein 8e-44 49
Tfu_1330 YP_289391.1 response regulator receiver BAC0083 Protein 2e-43 45
Tfu_1330 YP_289391.1 response regulator receiver BAC0125 Protein 1e-41 44
Tfu_1330 YP_289391.1 response regulator receiver BAC0638 Protein 6e-35 43
Tfu_1330 YP_289391.1 response regulator receiver HE999704.1.gene1528. Protein 3e-33 42
Tfu_1330 YP_289391.1 response regulator receiver BAC0308 Protein 4e-40 42
Tfu_1330 YP_289391.1 response regulator receiver BAC0111 Protein 3e-43 42
Tfu_1330 YP_289391.1 response regulator receiver BAC0347 Protein 4e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tfu_1330 YP_289391.1 response regulator receiver VFG0596 Protein 4e-37 42
Tfu_1330 YP_289391.1 response regulator receiver VFG1390 Protein 2e-37 42
Tfu_1330 YP_289391.1 response regulator receiver VFG1389 Protein 9e-34 42
Tfu_1330 YP_289391.1 response regulator receiver VFG1386 Protein 5e-36 41