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Name : Daro_0879 (Daro_0879) Accession : YP_284105.1 Strain : Dechloromonas aromatica RCB Genome accession: NC_007298 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 952232 - 953941 bp Length : 1710 bp Strand : + Note : - DNA sequence : ATGCCCCCCCCGCAAAAAGTCCGCCTTGGAGACCTGCTGATCGAGCAAGGTCTGCTGACTGACGAACAATTGAAAATCGC GCTCGATGAACAGAAACGCACAGGGCGCAAGCTGGGGCGCGTTTTTGTCGAGAGTGGCTACGTTACCGAGGAAGGGATCT CGCAGGCGCTGGCTCGTCAGCTGCGGATTCCCTTCGTCAATCTCAACAGCTTCACACCCAAGCCGGACCTGATCAAGCTG TTGCCTGAGGCGCCAGCCCGACGCTTCCGGGCGCTGGTGCTTGATCAGTTGCCGGATGGACGCCTGCAGATAGGGCTGGC CGATCCAACCGATTTGCAGGCCTATGACGAAATTACCCGTCTGGTTCGGCGAGAGATTGATCTCGCAGTCGTTACTGAAA GCCAGTTGCTGGCGATGGTCGACCGCGTTTATCACCGTGGCGAACAGATTACCGGCCTTGCCAAGGAGCTGACTGCCGAG CTGGGCGATGTGCCGATCGAGTTCGGTGACCTGCTTGGCTTGAACCCCGGTGCCGAAGATGCGCCCGTCGTCAAGCTGCT GCAGACGGTGTTCGAGGAGGCCATGCGCCTGCGCGCTTCCGACATCCATTTCGAACCGCAGGAAAAATCACTGCGCATCC GCTTCCGGATCGACGGTGTGCTGCATATCCAGACCGAGGCCGACGCCAAAGTCTCATCGGCCGTCGCGCTGCGCCTGAAA CTGATGTCCGGGCTGGATATTTCCGAAAAGCGCCTGCCGCAGGATGGTCGATTCAACATCAAGGTGCGCGCCAATCCCGT TGACGTGCGTATTTCCACCCTGCCGACCCAATTCGGCGAGTCGGTCGTCATGCGTCTGCTCAACCAGAACACCGGCCTGC TTGAGCTTGAGAAGATCGGCATGCCAGAACGCGTTCTGGAGCGCTTCCGCCACGCCCTGAAGCGGCCGAGCGGCATGGTT CTGGTGACAGGCCCGACAGGTTCCGGCAAGACGACGACGCTTTATGCTGCGCTGAACGAACTGAACAGCCCGGAAAAGAA GGTCATTACCGTCGAAGATCCGGTCGAATACAGGCTTCCTGGCTTGAATCAGGTGCAGGTGCACGAAAAGATCGACCTTT CCTTCTCGCGCGTGCTGCGCACCGTGCTGCGTCAGGATCCGGATATCGTGCTGATCGGCGAAATGCGCGACCAGGAAACG GCCGAAATCGGTATGCGGGCCGCCATGACCGGCCACCTCGTGCTGTCGACCTTGCACACCAACGATGCCATGTCGACGCC AATCCGCCTGCTCGACATGGGGGTGCCACGCTACATGGTGGCGCTGTCGGTGCATATGGTCGTTGCCCAGCGGCTGGTTC GGGTCATCTGCGGCAATTGTCGCGAGGCCTATGTGCCAACGCCAAACGAGCACGAATGGCTACGTTACGAGTTGGGCAGT CAGATCGATAGCCATGTCTTCCATCATGGTCGCGGCTGTGCGCACTGTGCCAACACGGGCTATCAGGGCCGGACGGGCGT CTATGAGTTTCTTGAAATGAGTGATCCGGTGGTTGAAGCGATCAACCATGAGGACCCGGGTGAATTCCTGCGTGTCGCCC GGCAGCAGATGGCCGGCGAGACCCTGCGTCGCGATGCGGTCCGCCTGGTCCTGGCCGGAACGACCAGTGTGGCCGAAGCC ATGCGCATCAGTAACCAGTTCGAGGAATAG Protein sequence : MPPPQKVRLGDLLIEQGLLTDEQLKIALDEQKRTGRKLGRVFVESGYVTEEGISQALARQLRIPFVNLNSFTPKPDLIKL LPEAPARRFRALVLDQLPDGRLQIGLADPTDLQAYDEITRLVRREIDLAVVTESQLLAMVDRVYHRGEQITGLAKELTAE LGDVPIEFGDLLGLNPGAEDAPVVKLLQTVFEEAMRLRASDIHFEPQEKSLRIRFRIDGVLHIQTEADAKVSSAVALRLK LMSGLDISEKRLPQDGRFNIKVRANPVDVRISTLPTQFGESVVMRLLNQNTGLLELEKIGMPERVLERFRHALKRPSGMV LVTGPTGSGKTTTLYAALNELNSPEKKVITVEDPVEYRLPGLNQVQVHEKIDLSFSRVLRTVLRQDPDIVLIGEMRDQET AEIGMRAAMTGHLVLSTLHTNDAMSTPIRLLDMGVPRYMVALSVHMVVAQRLVRVICGNCREAYVPTPNEHEWLRYELGS QIDSHVFHHGRGCAHCANTGYQGRTGVYEFLEMSDPVVEAINHEDPGEFLRVARQQMAGETLRRDAVRLVLAGTTSVAEA MRISNQFEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-86 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-86 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Daro_0879 | YP_284105.1 | type II secretion system protein E | VFG0182 | Protein | 5e-91 | 42 |
| Daro_0879 | YP_284105.1 | type II secretion system protein E | VFG2048 | Protein | 8e-87 | 41 |
| Daro_0879 | YP_284105.1 | type II secretion system protein E | VFG1876 | Protein | 7e-92 | 41 |
