Gene Information

Name : fliP (Daro_0763)
Accession : YP_283989.1
Strain : Dechloromonas aromatica RCB
Genome accession: NC_007298
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 832031 - 832777 bp
Length : 747 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
ATGAATAAGCGCCTGGCAATGACACTGGCCCTCCTGCTTCCGGCAGGACTCGCCTTTGCTCAGGCGGCCGGTGGCCTGCC
TGCGGTGACCAGCACTCCGGCAGCGGGTGGCGGCACAACTTATTCGCTGACCATCCAGACACTGCTGTTGATGACAGCAC
TGACCTTCATTCCAGCCATCGTGCTAATGATGACAGGCTTTACTCGAATCGTGATCGTCCTTTCCTTGCTGCGCCATGCG
CTTGGCACGCAGACCGCCCCGCCCAATCAGGTGGTCGTCGGACTTTCCCTGTTTCTGACCTTTTTTGTCATGAGTCCGGT
ACTGGAAAAGGTTTATACGGACGCCTACGTCCCATTATCGGAAAACAAGATCAACATCATGCAGGCGGGGGAGCGAGCTG
CAATCCCGATGCGCAGCTTCATGCTTAAACAGACTCGCGAGTCTGATCTGGCTCTTTTTGCCGGCATCGCAAAAATCGAC
AAGATCGAAACACCTGAAGATACCCCCCTGCGCATTCTGGTCCCAGCCTTCGTGATCAGTGAATTGAAGACCGCTTTTCA
AATTGGCTTCATCCTGTTCATTCCTTTTCTGGTCATCGACATGGTCGTGGCCAGCCTGCTGATGTCGATGGGCATGATGA
TGATGTCTCCTGTCATGGTCGCACTACCATTCAAATTGATGCTGTTCGTTCTGGTCGATGGCTGGCATCTGGTCATCGGC
TCGCTGGTCCAGAGTTTCTCGCCGTGA

Protein sequence :
MNKRLAMTLALLLPAGLAFAQAAGGLPAVTSTPAAGGGTTYSLTIQTLLLMTALTFIPAIVLMMTGFTRIVIVLSLLRHA
LGTQTAPPNQVVVGLSLFLTFFVMSPVLEKVYTDAYVPLSENKINIMQAGERAAIPMRSFMLKQTRESDLALFAGIAKID
KIETPEDTPLRILVPAFVISELKTAFQIGFILFIPFLVIDMVVASLLMSMGMMMMSPVMVALPFKLMLFVLVDGWHLVIG
SLVQSFSP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-26 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-25 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-26 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-26 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-26 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-27 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-27 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 7e-26 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_283989.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-64 68
fliP YP_283989.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-60 64
fliP YP_283989.1 flagellar biosynthesis protein FliP VFG1259 Protein 5e-54 59
fliP YP_283989.1 flagellar biosynthesis protein FliP VFG2016 Protein 4e-46 53