|
Name : Daro_0578 (Daro_0578) Accession : YP_283805.1 Strain : Dechloromonas aromatica RCB Genome accession: NC_007298 Putative virulence/resistance : Virulence Product : ornithine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.17 Position : 644540 - 646768 bp Length : 2229 bp Strand : + Note : - DNA sequence : ATGCGCTTCCACTTCCCCATCATCATCATCGACGAGGACTTCCGCTCGGAAAATACCTCGGGCTTCGGTATCCGCGCCCT GGCCGAGGCGATCGAGAAGGAAGGCATGGAAGTGGTCGGGGTGACCAGTTACGGCGACCTGACCTCGTTTGCCCAGCAGC AGAGCCGCGCCTCGGCTTTCATCCTGTCGATCGACGACGAGGAACTGGCGCTGGAGCCCGAAGAAACGCTGGCCGAGCTG CGCGCCTTCGTCAAGGAAATCCGCAATCGTAATGCCGAGATTCCGATCTTCCTGCACGGCGAAACGCGCACTTCGCGCCA CATCCCGAACGACGTGCTGCGCGAACTGCACGGCTTCATCCACATGTTCGAGGACACGCCGGAGTTCATCGCCCGCAACG TCAAGCGTGAGGCGCAGGCCTACCTCGATTCGCTGCCGCCGCCGTTCTTCCGGGCGCTGACCCACTACGCGGCCGACGGT TCGTATTCGTGGCATTGCCCTGGCCACTCGGGCGGCGTTGCCTTCCTTAAGTCGCCGGTCGGCCAGATGTTCCACCAGTT CTTCGGCGAGAACATGCTGCGCGCCGACGTCTGCAATGCTGTCGAGGAACTCGGCCAGTTGCTCGACCATACCGGCCCGG TGGCCGCTTCCGAGCGCAACGCAGCCCGTATCTTCAATGCCGACCATCTGTATTTCGTGACCAACGGCACCTCGACGTCG AACAAGATTGTCTGGCACTCGACCGTCGCACCGGGCGATGTCGTGGTTGTTGACCGCAACTGCCACAAGTCCATCCTGCA CGCCATCATGATGACCGGGGCGATCCCCGTTTTCCTGATGCCGACGCGTAACAATTTCGGCATCATCGGGCCGATCCCGA AGAGCGAATTCGCCTGGGAGAGCATCCAGAAGAAGATCGCCGCCAATCCCTTCATCACCGACAAGACCGCCAAGCCGCGC GTGCTGACGATCACCCAGTCGACCTACGACGGCATCCTCTACAACGTCGAGGACATCAAGGACATGCTCGACGGCAGGAT CGACACCCTGCATTTCGACGAAGCCTGGCTGCCGCACGCCGCCTTCCACGATTTCTACGGCGATTACCACGCCATCGGCG CCGATCGTCCGCGCTGCAAGGAGTCGATGATTTTCTCGACGCAATCGACCCACAAGCTGCTGGCCGGCCTCAGCCAAGCC TCGCAGATCCTGGTGCAGGATGCCGACAACTACAAGCTCGACCGCGACATCTTCAACGAAGCCTATCTGATGCACACCTC GACCTCGCCGCAGTATTCGATCATCGCTTCCTGCGATGTGGCGGCGGCGATGATGGAAGAGCCGGCTGGTACGGCGCTGG TCGAGGAGTCGATTGCCGAAGCCCTCGATTTCCGCCGCGCCATGCGCAAGGTGGACGAAGAGTGGGGCGCCGACTGGTGG TTCAAGGTCTGGGGGCCGGACGACCTGTCCGAAGAGGGTATCGAAGAACGTGAGGCGTGGATGCTCAAGCCGGGCGAGCG CTGGCACGGCTTCAACAATCTGGCCGACGGCTTCAACATGCTCGACCCGATCAAGGCAACGATCATCACCCCGGGCCTCG ACGTCGATGGCGATTTCGCCGACGAATTCGGCATCCCGGCGGCCATTGTGACCAAGTACCTGGCCGAGCACGGCGTTATC GTCGAGAAGTGCGGCCTGTACAGCTTCTTCATCATGTTTACGATCGGCATCACCAAGGGCCGCTGGAACACGCTGGTCAC CGCGCTGCAGCAGTTCAAGGACGATTACGACAAGAACCAGCCGCTGTGGAAGGTATTGCCCGAGTTCGTGCAGAAGAATC CGCGTTACGAGCGGGTTGGTTTGCGCGATCTATGCACGCAGATTCACAGCGTCTACAAACACAATGACGTCGCCCGTCTG ACCACCGAGATGTACCTGTCGGACATGGTCCCGGCCATGCGTCCGGCCGATGCTTTCGCCAAGATGGCGCATCGCGATAT CGAGCGCGTGCCAGTCGATGCCCTTGAAGGCCGGGTTACCGCGGTGCTGTTGACGCCATATCCGCCGGGCATTCCGCTGC TGATTCCGGGCGAACGCTTCAACAAGACGATCTGCAGCTACCTGAAGTTTGCCCGCGAGTTCAACGCCCGCTTCCCCGGC TTCGAGACCGACGTGCACGGTCTGGTCAAGGGCGGGGACGGCAGCTACTACGTCGATTGCGTGCGCTGA Protein sequence : MRFHFPIIIIDEDFRSENTSGFGIRALAEAIEKEGMEVVGVTSYGDLTSFAQQQSRASAFILSIDDEELALEPEETLAEL RAFVKEIRNRNAEIPIFLHGETRTSRHIPNDVLRELHGFIHMFEDTPEFIARNVKREAQAYLDSLPPPFFRALTHYAADG SYSWHCPGHSGGVAFLKSPVGQMFHQFFGENMLRADVCNAVEELGQLLDHTGPVAASERNAARIFNADHLYFVTNGTSTS NKIVWHSTVAPGDVVVVDRNCHKSILHAIMMTGAIPVFLMPTRNNFGIIGPIPKSEFAWESIQKKIAANPFITDKTAKPR VLTITQSTYDGILYNVEDIKDMLDGRIDTLHFDEAWLPHAAFHDFYGDYHAIGADRPRCKESMIFSTQSTHKLLAGLSQA SQILVQDADNYKLDRDIFNEAYLMHTSTSPQYSIIASCDVAAAMMEEPAGTALVEESIAEALDFRRAMRKVDEEWGADWW FKVWGPDDLSEEGIEEREAWMLKPGERWHGFNNLADGFNMLDPIKATIITPGLDVDGDFADEFGIPAAIVTKYLAEHGVI VEKCGLYSFFIMFTIGITKGRWNTLVTALQQFKDDYDKNQPLWKVLPEFVQKNPRYERVGLRDLCTQIHSVYKHNDVARL TTEMYLSDMVPAMRPADAFAKMAHRDIERVPVDALEGRVTAVLLTPYPPGIPLLIPGERFNKTICSYLKFAREFNARFPG FETDVHGLVKGGDGSYYVDCVR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 7e-113 | 41 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 1e-106 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Daro_0578 | YP_283805.1 | ornithine decarboxylase | VFG1670 | Protein | 8e-107 | 41 |
