Name : smpB (BPEN_568) Accession : YP_278055.1 Strain : Candidatus Blochmannia pennsylvanicus BPEN Genome accession: NC_007292 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 677490 - 677954 bp Length : 465 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGAATCAGTTAATTTTAAAGAAAATTACACAAAATAAACATGCATATCATGAATATTTTATTGAAAAAAAAATTGAATC TGGAATTTCATTGTTAGGATGGGAAGTAAAATCTGCTCGTTCTAATATGGTAACTATTAATAATAGTTACGTATCTTTTT ATAATAAGGAAGCGTATATTTGTAATTCTATATTTCAATCAAATGTAACTCAATTTTATAATGAAACTCACAATTCCGTT CGTGTGCGTAAATTGTTATTAAAAAAAAATGAATTATTATTTTTAATGGAAAAAGTTAATCAAAAAGGTTACACTGCAAT TATTTTAGATTTGTATTGGAAAAATTCTTGGATTAAAGTGAATATTGGCCTTGCTAAAGGTAAAAAAAAATACGACAAAA GAAATATAATACATATGCATAAATGGAAGAAAGAAAAAATACGTATTTTAAAGTATATGAAATAA Protein sequence : MNQLILKKITQNKHAYHEYFIEKKIESGISLLGWEVKSARSNMVTINNSYVSFYNKEAYICNSIFQSNVTQFYNETHNSV RVRKLLLKKNELLFLMEKVNQKGYTAIILDLYWKNSWIKVNIGLAKGKKKYDKRNIIHMHKWKKEKIRILKYMK |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 3e-19 | 43 |