Gene Information

Name : PSPPH_A0089 (PSPPH_A0089)
Accession : YP_272199.1
Strain :
Genome accession: NC_007274
Putative virulence/resistance : Unknown
Product : ISPsy21, transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 77174 - 78076 bp
Length : 903 bp
Strand : -
Note : identified by similarity to GB:CAD42759.1; match to protein family HMM PF00665

DNA sequence : 
ATGAAGACGTTTATTGATGAAAACCGCCAGTCTTACGGGGTCGAGCCGATTTGCAAGGTGTTGCCAATCGCCCCGTCGAC
GTACTACCGGTACGCTGCTCAGCAGGCTGACCCCAGCCAGCAGTCAGCGCGTGCGCAGCGTGACCAGGAACTGGGTGAGC
ACATCCAGCGAGTCTGGGATAAGCACTTCCATGTATATGGCATGCGCAAGGTCTGGCGACAGTTGCTGCGTGAAGGCCAG
CAAGTCGCCCGCTGTACGGTGCAACGCCTGATGGGAGAGCTGGGCCTGCAAGGCGTGGTACGCGGCAAGCCCGTCAAGAC
GACGGTCAGCGACCAAGCCAGGCCGTGCCCGCAGGATCATGTCAACCGTCAGTTTGTTGCTGAGTGCCCGAACGCCCTAT
GGGTATCGGACTTTACCTACGTCAGTACCTGGCAGGGTTTTGTTTACGTGGCCTTCATCGTTGATGTCTTTGCCCGATTC
ATCGTCGGTTGGAAGGTGTCCAGTTCAGCGCGTACCGATTTTGCACTCGATGCACTGGAGCAAGCCCTTTACGCCCGTCG
CCCAGTCAAGCAGGGTGGACTCATTCACCACAGTGACCGTGGCGTGCAGTACGTGTCCATTCGCTATACCGAGCGTCTTG
TCGAAGCCGGTATTGAGCCATCGGTCGGGAGTGTCGGTGACTCTTACGACAATGCCTTGGCTGAGACCATCAATGGTCTT
TACAAGGCTGAAGTGATTCATCGACGCTCTTGGCCCACACGGGGGGCGGTGGAGCTGGAAACGCTGAAATGGGTGGACTG
GTTCAATCACCGCCGCCTGCTGGAGCCAATCGGTCATATTCCACCGGTCGAGGCAGAAGCCATCTATTATCAGCAACTCA
CCGAGTCTGCCCAGGTGGCATGA

Protein sequence : 
MKTFIDENRQSYGVEPICKVLPIAPSTYYRYAAQQADPSQQSARAQRDQELGEHIQRVWDKHFHVYGMRKVWRQLLREGQ
QVARCTVQRLMGELGLQGVVRGKPVKTTVSDQARPCPQDHVNRQFVAECPNALWVSDFTYVSTWQGFVYVAFIVDVFARF
IVGWKVSSSARTDFALDALEQALYARRPVKQGGLIHHSDRGVQYVSIRYTERLVEAGIEPSVGSVGDSYDNALAETINGL
YKAEVIHRRSWPTRGAVELETLKWVDWFNHRRLLEPIGHIPPVEAEAIYYQQLTESAQVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-66 67
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 4e-66 67
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-75 67
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-81 65
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-80 64
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-81 64
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-81 64
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-81 64
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-81 64
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 5e-83 64
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 8e-82 64
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-83 64
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 6e-83 64
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-83 64
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-80 64
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-82 64
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-80 64
Z1198 NP_286733.1 transposase Not tested TAI Protein 4e-80 63
Z1638 NP_287141.1 transposase Not tested TAI Protein 4e-80 63
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 4e-80 63
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 5e-56 63
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-51 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-38 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSPPH_A0089 YP_272199.1 ISPsy21, transposase orfB VFG1602 Protein 2e-80 63