|
Name : gabD (SAR11_0766) Accession : YP_266187.1 Strain : Candidatus Pelagibacter ubique HTCC1062 Genome accession: NC_007205 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase (NAD(P)) Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 742383 - 743825 bp Length : 1443 bp Strand : + Note : - DNA sequence : ATGTACGAAAAATTTGGACAATTTATCGATGGCAATTGGTCGCCCTCTTCTAACAAGGAAACTTATAAAGTTATCAATCC TGCAACAGAAGAAGTTTTAGGCCACGCTTCAAAAGCAACACCTGTTGATGTGGATAGAGCATTAAAATCTGCAGAAAAGG GATTAGCTATTTGGAGAAAAACTCCACCATGGCAAAGAGCTTATACGCTTAGAAAAATTGCTGACATGGTAAGAGAAAAA AAAGATGTACTTGCTAAATGGATGACTTTAGAAAATGGAAAACCTTTAGCAGAAGGTGTTGGTGAAACGAATGGTGCTGC AGATATTTTTGAATGGAATGCTGAAGAGACAAAAAGAATTTATGGACAAATTGTAGAAAGTAGATTTGAAGACACGAGAG TGCATGTTTATTATCAACCGATTGGAGTAGTGGCTGCTTTGTCACCTTGGAATTTTCCACTTGTATTAGCTGCTAGAAAA ATTTCTACAGCATTAGCTGCGGGCTGTTCAGTAATTATCAAGCCAGACACAATTACACCAGGTGTGGTTATGGAATTAGT CGATATTTGTAGGGAATGCGGAATACCCGCTGGTGTAGTTAATCTTTTGTCAGGTGATCCACCTGCAATTGCGTCACAAT TAATTTCATCTGATATTATTAAAAAAATCTCAGTTACAGGCTCAACTAGAGTTGGTAAAATAATTTTAAAACAAGCTGCA GATAAATTACAAAGAGTAACAATGGAGTTAAGTGGTCATTCTCCTTTCATTGTATTTGATGATGCTGATTTAAATAAAGC AACGGACATAGCTATTGCTGCTAAATTTAGAAATAATGGTCAAGTTTGTATTTCACCTAATAGATTTTACATTCAGGAAA GTAAAAAAGATGAGTTCGTTGGTTTATTTATTGAAAAAACTAAAAAACTTAAGATTGGTAATGGTATGGATCCAGATACA CAACTAGGACCGTTAACAACGCAAAAAAGACTAAATGAAGTTGAAGAGCTAGTTGAAAAAACGAAACAAGAAGGAGCTAA AGTTTTATTGGGAGGTAAGAGGCCTGCAGGATTTAATAAAGGTTTTTATTATGAGCCAACTGTTTTTGATGATGTTAAAG ATGACTTTACGATCATGAAACAAGAACCATTTGGGCCATTAGTTCCAATGCTGTCATTTAAATCTTTTGATGAAGTTATT GAAAGAGCAAATGATAATGATTTAGGTCTTTGTAGTTATATTTGTACTAATTCAATGGATAAAGCTTATAGAGCCTCTGA ATTAATGGAAGCAGGCATTGCTTGTGTGAATACTGGTGTTGTAGCAGTTGCAGAAGCTCCATTTGGTGGAATAAAACAAA CTGGCTATGGTAGAGAAGGTGGCTCTAACGCAATTAAAGATTATCTAAATGTTAAATATACTCATATGGGTATTAAGGGC TAG Protein sequence : MYEKFGQFIDGNWSPSSNKETYKVINPATEEVLGHASKATPVDVDRALKSAEKGLAIWRKTPPWQRAYTLRKIADMVREK KDVLAKWMTLENGKPLAEGVGETNGAADIFEWNAEETKRIYGQIVESRFEDTRVHVYYQPIGVVAALSPWNFPLVLAARK ISTALAAGCSVIIKPDTITPGVVMELVDICRECGIPAGVVNLLSGDPPAIASQLISSDIIKKISVTGSTRVGKIILKQAA DKLQRVTMELSGHSPFIVFDDADLNKATDIAIAAKFRNNGQVCISPNRFYIQESKKDEFVGLFIEKTKKLKIGNGMDPDT QLGPLTTQKRLNEVEELVEKTKQEGAKVLLGGKRPAGFNKGFYYEPTVFDDVKDDFTIMKQEPFGPLVPMLSFKSFDEVI ERANDNDLGLCSYICTNSMDKAYRASELMEAGIACVNTGVVAVAEAPFGGIKQTGYGREGGSNAIKDYLNVKYTHMGIKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 3e-93 | 41 |
