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Name : dnaB (Psyc_0959) Accession : YP_264246.1 Strain : Psychrobacter arcticus 273-4 Genome accession: NC_007204 Putative virulence/resistance : Unknown Product : primary replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : 3.6.1.- Position : 1144536 - 1145939 bp Length : 1404 bp Strand : - Note : The N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. The C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. DNA sequence : ATGGCAGATACTGAAAAAACCGACGACTTACTCAATCAAACACCGCCGCACAATATCGATATTGAAAAGGCATTGCTAGC GTCTTTGATGAGTATCGAAGAGGCATATGACAAAATTGCAGATATTGTCACCAAAGACGATTTTTATGCTGGACGACACC AGTATATTTTTGATGCCATTGCTCATTTAGCCGCCGTCAATGAGCCTTATGATACCGTCATGGTGCACGATTGGTTAGAG GCACAAAAACTGCTCAAAAGCGCAGGTGGTGACAGTTATTTGGCAGATATTTTGAGCCAAAGCCCTGCCACCTTATTTAA CCTGACCGCTTACGCCCAGCGCGTGCGTGAGCTGTCTACGCTACGTCAGCTCATTACCACCGGTAATGATATGTTGACCC TAGCCTACAACCCCAAAGACCAAACCGTCAGCGATATTTTGGACAACGTAGAAGCAAAAATATTTAGTATCAATGAGCAA CATAACAAACGTGCTGAGCAGCGTGGACCTGTAGGTATTACCGCCGTATTGACCAATGTCCTTGATAAAATCCAAGAACT TAAATCAAACCCAGATGGCATGATTGGCTTACAAACACCATTTGTTGAGCTCAATAATAAAACCCAAGGCTTGCAAGCAG GCGATTTAGTCATTGTGGCTGCCCGTCCATCGATGGGTAAAACCACCTTTGCCATGAACTTAGCAGAAGGGATTTTATTT AATGAAGATTTGCCCGTGGTGGTATTTTCGATGGAGATGCCCGCAGAATCTATCGTGATGCGCTTGCTGTCATCGTGGGG CGCCATCAATCAGACGCACCTGCGTTCTGGGCAAATGAACGAAGATGAATGGGCAAAAATGATGAACGCCATTCAGCATT TGCAGTCAAAGCATCTATATATTGATGACAGTACTGCCCTGCCACCATCTGAGCTGCGCTCACGCTGTCGCCGTATTGCC AAAAACCATGATGGCAAGCTTGGCGCTATCATTGTCGATTACCTACAATTAATGAAAGTACCAGGTCTAGATGGTAACCG TGTTGGAGAGATCTCTGAGATTTCTCGGAGCTTAAAAGCGCTGGCACGTGAGCTTGAATGTCCGGTTATCGCCTTATCGC AGCTTAACCGTAGCCTAGAAAATCGCCCTAACAAACGCCCTATTATGTCAGATCTGCGTGAATCTGGTGCGATTGAGCAG GATGCCGATTTGATTATGTTCATCTATCGTGATGAGGTTTATAATGAGAATACAGACCATAAAGGGGTGGCTGAAATTAT CATTGGTAAACAGCGTAATGGTCCTATCGGCACCATACGTTTAGGTTTTGAAGGGCAATTTACCCGCTTTATCAATTTGA CTCCAGAATACTATCAAAACGTCAGTTTCGAGAATGACGAATAA Protein sequence : MADTEKTDDLLNQTPPHNIDIEKALLASLMSIEEAYDKIADIVTKDDFYAGRHQYIFDAIAHLAAVNEPYDTVMVHDWLE AQKLLKSAGGDSYLADILSQSPATLFNLTAYAQRVRELSTLRQLITTGNDMLTLAYNPKDQTVSDILDNVEAKIFSINEQ HNKRAEQRGPVGITAVLTNVLDKIQELKSNPDGMIGLQTPFVELNNKTQGLQAGDLVIVAARPSMGKTTFAMNLAEGILF NEDLPVVVFSMEMPAESIVMRLLSSWGAINQTHLRSGQMNEDEWAKMMNAIQHLQSKHLYIDDSTALPPSELRSRCRRIA KNHDGKLGAIIVDYLQLMKVPGLDGNRVGEISEISRSLKALARELECPVIALSQLNRSLENRPNKRPIMSDLRESGAIEQ DADLIMFIYRDEVYNENTDHKGVAEIIIGKQRNGPIGTIRLGFEGQFTRFINLTPEYYQNVSFENDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 5e-90 | 47 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 1e-78 | 46 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 2e-81 | 44 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 3e-77 | 43 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 1e-80 | 43 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-77 | 42 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-77 | 42 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 8e-81 | 42 |
