Gene Information

Name : lolD (Psyc_0782)
Accession : YP_264069.1
Strain : Psychrobacter arcticus 273-4
Genome accession: NC_007204
Putative virulence/resistance : Resistance
Product : lipoprotein ABC transporter ATPase LolD
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 934537 - 935217 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTGCTATCTTAAAAGCGACCAATATTAATAAGATATACGATGAAGGCGCCGTGAGTACCCAAGTTTTGACTGGTTT
GGATTTGACTGTCAATGCCGGTGAGCGTATTGCTATCGTTGGCACCAGTGGGTCAGGAAAGAGTACCTTGCTTCATCTGC
TTGGTGGGCTTGATACGCCAACCAGTGGTGAGGTTTGGTTGCATGGTCAGTTATTAAACAGTATGAATGAGACCGAACGC
GGTGCGATGCGTAATAAGCATTTGGGATTTATTTATCAGTTCCATCATCTGTTGGCTGAATTTACTGCCGTTGAAAACGT
TGCCATGCCATTATTGATGCGCTCAGAAGTATCGACGGCTGAAGCGCGTCAACAAGCCATCGATATTTTAAACAGTGTTG
GTCTTGAGCATCGTTTGGCACATAGACCTGGTGAGCTGTCAGGTGGTGAGCGTCAGCGTGTGGCGATTGCGCGTGCTTTG
GTCACTAAGCCGTCGCTTATTTTGGCAGATGAGCCAACGGGTAACCTAGATTATGACAATGCGCAAAGCGTGTTTGGATT
ATTATCAGAGCTACAAAGCACCATGCAAACAGCACTATTGATGGTCACCCATGATCGCAATCTAGCAGCGCTTGCTGATC
GTCAGCTGTTATTACGCAATGGTCATTGGGAAAATTATTAA

Protein sequence : 
MSAILKATNINKIYDEGAVSTQVLTGLDLTVNAGERIAIVGTSGSGKSTLLHLLGGLDTPTSGEVWLHGQLLNSMNETER
GAMRNKHLGFIYQFHHLLAEFTAVENVAMPLLMRSEVSTAEARQQAIDILNSVGLEHRLAHRPGELSGGERQRVAIARAL
VTKPSLILADEPTGNLDYDNAQSVFGLLSELQSTMQTALLMVTHDRNLAALADRQLLLRNGHWENY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-30 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-30 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-30 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_264069.1 lipoprotein ABC transporter ATPase LolD NC_012469.1.7686878. Protein 4e-36 46
lolD YP_264069.1 lipoprotein ABC transporter ATPase LolD CP001581.1.gene598.p Protein 3e-35 44
lolD YP_264069.1 lipoprotein ABC transporter ATPase LolD NC_008702.1.4606598. Protein 2e-32 44
lolD YP_264069.1 lipoprotein ABC transporter ATPase LolD CP001581.1.gene798.p Protein 2e-35 42