Gene Information

Name : Psyc_0017 (Psyc_0017)
Accession : YP_263325.1
Strain : Psychrobacter arcticus 273-4
Genome accession: NC_007204
Putative virulence/resistance : Unknown
Product : IS30 family transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 20981 - 21799 bp
Length : 819 bp
Strand : +
Note : -

DNA sequence :
ATGTGCCGCGTGCTAAGTGTTAAGCCATCAAGCTATTACGACTGGCTAAGTCGTGATCTCAGCGACCAACAGATACATCG
CAATCAGTGTGAACTACTGGTTAAAGTCGCTCATACTGAGACCAAGCAGTGCTATGGCGTAGATCGACTGCATGCCCACC
TAAGTGCGCAAGGGCACGATATCAGCCAATATATGGTTAGAAGCATCAAAGAAGAACATGGCATCAAATGCCGTCGCCAC
AAACGCTTTAAAGTCACCACCGACTCCAATCACAACAAGCTGGTCTATCCAAACGTACTGGATCAGAAGTTTGATGCCAG
TCGCCCTAACCAAGCGTGGGTCAGTGACATCACCTATATTTGGACGCTTGAGGGCTGGTTGTATTTAGCGGGGGTTAAGG
ACTTATACACCAAAGAGCTTGTTGGATATGCCATCAATAAGCGCATGACTGCTGATTTGGTTTGCCGTGCACTTAATATG
GCAATTAAGAATAAAGGGCCAAGCCAAGGGCTGACTGTGCATTCCGATAGAGGCAGCCAGTATTGTAGCCATGCGTACCA
TAATATTATCAAGCAGCATCATTTTAAAGGCTCAATGAGTGGCAAAGGTAATTGTTATGACAACGCACCCATAGAAAGCT
TCTGGGGCACATTAAAGAATGAGCTGGTATATCATCAAGACTATAAAACAAGGTTTACAGCCATTACCGATATCATTAGA
TATATCGAGCTGTATTACAATCAGACTAGGATTCAAAAGGGCTTGGGCTATAAATCGCCAAGACAGGTGTGGTTTGACTT
TTATCGTCATGCTGCGTAA

Protein sequence :
MCRVLSVKPSSYYDWLSRDLSDQQIHRNQCELLVKVAHTETKQCYGVDRLHAHLSAQGHDISQYMVRSIKEEHGIKCRRH
KRFKVTTDSNHNKLVYPNVLDQKFDASRPNQAWVSDITYIWTLEGWLYLAGVKDLYTKELVGYAINKRMTADLVCRALNM
AIKNKGPSQGLTVHSDRGSQYCSHAYHNIIKQHHFKGSMSGKGNCYDNAPIESFWGTLKNELVYHQDYKTRFTAITDIIR
YIELYYNQTRIQKGLGYKSPRQVWFDFYRHAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 5e-58 49
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 5e-58 49
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 1e-57 48
unnamed AAF09030.1 unknown Not tested SHI-O Protein 1e-57 48
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 1e-57 48
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 1e-57 48
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 1e-57 48
unnamed AAF09022.1 unknown Not tested SHI-O Protein 8e-57 47
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-57 47
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-43 42
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 6e-43 42
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-43 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 4e-41 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-41 42
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psyc_0017 YP_263325.1 IS30 family transposase VFG1706 Protein 6e-58 48