|
Name : clpA (Psyc_1498) Accession : YP_264780.1 Strain : Psychrobacter arcticus 273-4 Genome accession: NC_007204 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpA Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : 3.4.21.92 Position : 1817787 - 1820336 bp Length : 2550 bp Strand : - Note : - DNA sequence : ATGTTAAGTCGTCATCTTGAAGTTTCTTTGCGTTTAGCAATGACACTTGCGCGCCAAAAATCGCATGAGTATCTCACTGT TGAACATCTCTTACTGGCACTCTTAGAAAATACGCACGCTGCCAACACATTGACGGCCTGTAATGCAAATGTCTCAGCAC TACGTACTGAGCTTGAGGCTTATATTAATAAGCACACTCCAACGGTCGATCCTGATACTGAGCAATCGCCGCAGCCGACT CAAAGCTTTGATCGTATCCTGCAACGTGCGATTTTTCATGTGCAATCTATCGGTGGTGGTCGTTTGGTTGAAGGATCGGA TATTCTAGTATCGATGTTTTCAGAACATGACACTTATGCTGTTTATTTGCTCAAAAAACAGGGTATCAGTCGTCTTGAGC TGACCCAGTACTTATCACATGGTCATGATAAAGATGAGCCCTCTGAGCCGCGTGCTTCTATGACTGGAGAGCGCCGCAGT AGTGCCTCAGAAAAAACAAGTAAAGATCCATTGGTTGAGTTTGCGACCAATTTAAATCAACGTGCTGCTGAAGGCAAAAC GGATCCATTGATTGGGCGTGGTCCTGAAATTGAACGAGCCGCGCAAGTATTGTGTCGCCGCCGCAAAAACAATCCATTAT TAGTCGGTGAGCCGGGCGTTGGTAAAACCTCTATTGCTGAAGGGTTGGCGTGGTTAATTATCAATGATAAAGCACCAAAG CCCCTTAATGGTTGCGTGATTTATAGTCTTGATATTGGCTCATTAATTGCTGGTACTAAGTATCGCGGCGATTTTGAGAA ACGCATGAAATCGCTCCTTGATGCGCTGAAGAAAAAGCCCAATGCTATCTTGTTTATTGATGAGATTCATATGATTATTG GTGCAGGTTCGTCAATGAGCAGCAATATGGATGTCTCAAACTTGATTAAGCCGGCACTTGCCAATGGCGAGCTGCGTTGT ATCGGTTCAACTACTTTTACCGAGTATCGTCAGGTATTTGAAAAAGACCATGCCTTATCGCGTCGCTTCCAAAAAATCGA TGTTAAAGAGCCAAGTGTCGATGATACGATCGATATTTTGCGCGGTCTTAAACCGCGTTACGAAGAATTTCATAACGTTG TATATACTGATGAAGCGTTGGTCACCGCTGTACAGTTATCAGCCAAACATATCCACGAGCGTTTTTTACCGGATAAGGCA ATTGATGTTATTGATGAAGCGGGTGCTTATAAGCGTTTAGGGGTCGTGGCTGATGCAGATGATATAGAAGCAGAAGAAAA CTTCATTGCTGATATAGAGCAAGATTTTGATGCACAAATCGATGCTGATATTGAAGGTCTCGATGGCGAAACCTATAGTG ATAACGAAATGCAGGATGAAGCAAACACTGCAAAAGCCAATGATCGTGCAAAATCGTCTGATGATAAAAAAGCGAAAGGC AAACGTGCCCCGATAAAAATTGATGTGGCGGATATTGAAGCGATTGTTGCCAAGCTTGCGCGCATTCCGCCTAAGTCAGT ATCAAGTGATGATAAGAGTATTCTCCAGCATCTAGATCGTGATCTTAAGCATTTAGTGTTTGGGCAAGATGAGGCTATTG GAACTTTAGCAGATGCGATTAAGCTGTCTCGTGCCGGTTTAAAAGCACCAGATAAGCCAATTGGTTCATTCATGTTTGCA GGTCCTACAGGGGTTGGTAAGACGGAAGTCTCTCGTCAATTGGCAAATCTATTGGGTGTTGAGCTGGTGCGCTTTGATAT GTCAGAGTATATGGAAGCACATACTGCTTCACGTTTGATTGGTGCGCCGCCGGGTTATGTTGGTTATGATCAAGGTGGTC TGTTGACTGAAAAAATCAATCAGCATCCGCATTGCGTATTACTGTTTGATGAGATCGAAAAAGCGCATCCGGATGTCTTT AACTTGTTATTACAAGTGATGGATCACGGTACATTGACGGATAATAACGGTCGGGTTGCTATCTTTAAGCAGGTCATTGT TATTATGACGACCAACGTTGGTGCTGAGAGTATCAGTCGTTCCTCTATGGGCTTTACCCAGCAAGATCATAGCCGTGACA ATACGGAATCACTCAAGCGTGTCTTTACTCCAGAATTCCGTAACCGTCTTGATGCCATCATTCAATTTAATCCACTAGAT ACCTCAGTAGTCGTCTCAGTGGTCGATAAATTCTTGGTTGAGCTACAAGTACAGCTAGATGATAAGCAAGTCACTTTAGA GATTGATGATGATGTGCGTGATTATCTGGCTGCTAAAGGCTATGATCGCTTAATGGGCGCACGTCCAATGCAGCGTCTGA TTCAAGATGAAATCAAAAAGCCTTTGGCAAATATGATTTTATTTGGTGATTTGGTGAATGGTGGGGTTGTGCATTTAACC TTGGAGCCTGAAGCATCAGATGGTGATACTGTGAAGCTTGGTAAAGCTGGTGATAAGTCTTTAGATAAAGGATCAGCGGA TAGCCTTATTATATTGACAGTCGTTGAGATTCATGAGCCCCGTCCGGATTCTGAGTCGTTGGCCAGTTAG Protein sequence : MLSRHLEVSLRLAMTLARQKSHEYLTVEHLLLALLENTHAANTLTACNANVSALRTELEAYINKHTPTVDPDTEQSPQPT QSFDRILQRAIFHVQSIGGGRLVEGSDILVSMFSEHDTYAVYLLKKQGISRLELTQYLSHGHDKDEPSEPRASMTGERRS SASEKTSKDPLVEFATNLNQRAAEGKTDPLIGRGPEIERAAQVLCRRRKNNPLLVGEPGVGKTSIAEGLAWLIINDKAPK PLNGCVIYSLDIGSLIAGTKYRGDFEKRMKSLLDALKKKPNAILFIDEIHMIIGAGSSMSSNMDVSNLIKPALANGELRC IGSTTFTEYRQVFEKDHALSRRFQKIDVKEPSVDDTIDILRGLKPRYEEFHNVVYTDEALVTAVQLSAKHIHERFLPDKA IDVIDEAGAYKRLGVVADADDIEAEENFIADIEQDFDAQIDADIEGLDGETYSDNEMQDEANTAKANDRAKSSDDKKAKG KRAPIKIDVADIEAIVAKLARIPPKSVSSDDKSILQHLDRDLKHLVFGQDEAIGTLADAIKLSRAGLKAPDKPIGSFMFA GPTGVGKTEVSRQLANLLGVELVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKINQHPHCVLLFDEIEKAHPDVF NLLLQVMDHGTLTDNNGRVAIFKQVIVIMTTNVGAESISRSSMGFTQQDHSRDNTESLKRVFTPEFRNRLDAIIQFNPLD TSVVVSVVDKFLVELQVQLDDKQVTLEIDDDVRDYLAAKGYDRLMGARPMQRLIQDEIKKPLANMILFGDLVNGGVVHLT LEPEASDGDTVKLGKAGDKSLDKGSADSLIILTVVEIHEPRPDSESLAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-133 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpA | YP_264780.1 | ATP-dependent Clp protease ATP-binding subunit ClpA | VFG0080 | Protein | 4e-125 | 42 |
| clpA | YP_264780.1 | ATP-dependent Clp protease ATP-binding subunit ClpA | VFG0079 | Protein | 4e-128 | 42 |
