|
Name : kdsB (Psyc_1314) Accession : YP_264598.1 Strain : Psychrobacter arcticus 273-4 Genome accession: NC_007204 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 1584020 - 1584826 bp Length : 807 bp Strand : - Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS DNA sequence : ATGTCATCAGCGCTTATGCCCGTCAGAACTCATATCGTCATTCCTGCGCGTCTAAAAAGTACGCGTCTGCCCAACAAGCC ATTATTAACCATTCACGGCAAGCCCATGATACTTTGGGTGGCTGAAAAGGCACAATTGGCGGATTTTGCCGATGATATGT GTATCGCAACCGATGATGAATCAGTCGCTAAAGTCTGCGCAGAGGCAGGCTTTGATGTGGTGATGACACGTAGTGATCAT GCTTCGGGTACGGATCGTTTGGCTGAAGTGGCTGCTATTAAAGGTTGGGCTGCCCATGACATAGTGGTTAATATGCAAGG TGATGAACCACTGATACCGCCATTATTGTTAGAGCAGGTCAAAACATTATTGGTGCAAGATGCAGAGAGCGTCATGGCGA CCTTGTGTGAGCCAATCGAAGACTACAATACTTTTATACACCCATCGGTTGTCAAGGTTGTCAGTCAAAATACTAATAAC CAGCAGCGAGCAATTTATTTTAGTCGCGCGCCAATTCCTTGTGATCGTGATGTGGTCTTGAGTGATGAAGATAATACACA AGCACCAAAAAATGCCTATCGTCATTTGGGCTTATATGCTTATCGTGTCAGCCTGCTGCAGCAGTTTGTCCATTGGTCAC AAACCCCGCTTGAGATACTAGAAAGCCTAGAGCAGTTACGTGTGTTAGAAAATGGCGGACATATCGCCATTGCTAAAGCT GCCTGCCCATTACCAGCAGGTGTCGATACACAAGAAGATTTGGATCGTCTAAATGCTATGAGTTTGACGGCTTTCCAAGA TGATTAA Protein sequence : MSSALMPVRTHIVIPARLKSTRLPNKPLLTIHGKPMILWVAEKAQLADFADDMCIATDDESVAKVCAEAGFDVVMTRSDH ASGTDRLAEVAAIKGWAAHDIVVNMQGDEPLIPPLLLEQVKTLLVQDAESVMATLCEPIEDYNTFIHPSVVKVVSQNTNN QQRAIYFSRAPIPCDRDVVLSDEDNTQAPKNAYRHLGLYAYRVSLLQQFVHWSQTPLEILESLEQLRVLENGGHIAIAKA ACPLPAGVDTQEDLDRLNAMSLTAFQDD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 1e-30 | 43 |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 8e-30 | 43 |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 7e-31 | 43 |
