Gene Information

Name : kdsB (Psyc_1314)
Accession : YP_264598.1
Strain : Psychrobacter arcticus 273-4
Genome accession: NC_007204
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 1584020 - 1584826 bp
Length : 807 bp
Strand : -
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence :
ATGTCATCAGCGCTTATGCCCGTCAGAACTCATATCGTCATTCCTGCGCGTCTAAAAAGTACGCGTCTGCCCAACAAGCC
ATTATTAACCATTCACGGCAAGCCCATGATACTTTGGGTGGCTGAAAAGGCACAATTGGCGGATTTTGCCGATGATATGT
GTATCGCAACCGATGATGAATCAGTCGCTAAAGTCTGCGCAGAGGCAGGCTTTGATGTGGTGATGACACGTAGTGATCAT
GCTTCGGGTACGGATCGTTTGGCTGAAGTGGCTGCTATTAAAGGTTGGGCTGCCCATGACATAGTGGTTAATATGCAAGG
TGATGAACCACTGATACCGCCATTATTGTTAGAGCAGGTCAAAACATTATTGGTGCAAGATGCAGAGAGCGTCATGGCGA
CCTTGTGTGAGCCAATCGAAGACTACAATACTTTTATACACCCATCGGTTGTCAAGGTTGTCAGTCAAAATACTAATAAC
CAGCAGCGAGCAATTTATTTTAGTCGCGCGCCAATTCCTTGTGATCGTGATGTGGTCTTGAGTGATGAAGATAATACACA
AGCACCAAAAAATGCCTATCGTCATTTGGGCTTATATGCTTATCGTGTCAGCCTGCTGCAGCAGTTTGTCCATTGGTCAC
AAACCCCGCTTGAGATACTAGAAAGCCTAGAGCAGTTACGTGTGTTAGAAAATGGCGGACATATCGCCATTGCTAAAGCT
GCCTGCCCATTACCAGCAGGTGTCGATACACAAGAAGATTTGGATCGTCTAAATGCTATGAGTTTGACGGCTTTCCAAGA
TGATTAA

Protein sequence :
MSSALMPVRTHIVIPARLKSTRLPNKPLLTIHGKPMILWVAEKAQLADFADDMCIATDDESVAKVCAEAGFDVVMTRSDH
ASGTDRLAEVAAIKGWAAHDIVVNMQGDEPLIPPLLLEQVKTLLVQDAESVMATLCEPIEDYNTFIHPSVVKVVSQNTNN
QQRAIYFSRAPIPCDRDVVLSDEDNTQAPKNAYRHLGLYAYRVSLLQQFVHWSQTPLEILESLEQLRVLENGGHIAIAKA
ACPLPAGVDTQEDLDRLNAMSLTAFQDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 1e-30 43
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 8e-30 43
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 7e-31 43