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Name : hsdR (SH0062) Accession : YP_251977.1 Strain : Staphylococcus haemolyticus JCSC1435 Genome accession: NC_007168 Putative virulence/resistance : Unknown Product : type I restriction-modification system restriction subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 68450 - 71569 bp Length : 3120 bp Strand : - Note : - DNA sequence : ATGAACTTTCAATTTAATGAAGATGATTTAGAACAAGTCGTATTAGAATGGTTAGAATCACTAAGCTACGACTATAAAAA AGGTAATGAGATTAGTATGACAGGTCTAGCGCCAGAACGTAAAAGTGACAAAGATGTTGTCCTTCATGAACGTTTAGAGA AAGCATTAAGAAAAATCAACTCAGACATCCATCCTCGTTTTATTGAAAAAGCGATACATGAACTAACTTTAGAAAAGTCG CCCAATCTTTTAGAAAATAATCTTACCTTTCATGAAAATTTGATTAATGGTATTGAAATCGAAGACTATGATGACGAAGG ACAATCGATAGTAGAAATTGTTAAAATCGTTGATTTTGAACATCCACAAAACAATGATTTTTTAGCAGTCAATCAATTCA CTGTCGTTAATGGAGACTATACAAAACGTCCCGATATTGTACTCTTTATCAATGGTTTGCCTATCGTTGTCATTGAACTT AAAAATTCAACCAATGAAACTGTAGGCGTCGAAGACGGTTATCATCAATTAGAAACGTACAAGATGCGTATTCCACAATT ATTTACATTTAATGAAGTACTTGTTACAAGTGATGGCATTAATACTAAAGCAGGTTCACTAACTGCGAACTATGATCGTT TTATGACTTGGCGTTCTAAAGATGGAGAAACCGAATCTTCGTCAAGTTTAGCTAGCTTAGACGTACTGATTAATGGGATG TTAAATCCAAAAACCTTACTTGATTTAATTCGATATTTTGTATTATTCCAAGATGATGGCAAAGGACATATCAGTAAAAT TTTAGCAGCGTATCATCAATACTATGCCGTTAATAAAGCTGTTGATAGGGCTTTATTAGCTTCATCTGGACAAGGTGATG GTAAAGGTGGCGTCATTTGGCATACCCAAGGGTCTGGTAAAAGCTTAACGATGGTCTTTTTCTCTGGAAAATTAATTCAA ATGCTGAATAACCCTACCTTAGTCATCGTAACAGATCGTAATGACTTAGATAACCAACTGTACAGTACGTTTGTTAAATC AAAAGGACGTTCTGGTAAAGGTTTATTAAGACAAACGCCAAAACAAGCTGAAACACGCAAAGAATTAAAATCATTATTAT CTGTTGAGTCGGGCGGTATTGTATTTACAACAATGCAAAAATTTGAACCTGAACAAAACGAAACGATCATGGCTGCCCTA ACTGAACGTAAAAATGTGATTGTTATGGCAGATGAAGCACATCGTACACAATATGGCTTTAACGCAAAATACGATGATAA AGGTGAAGGCATTAAATATGGTTATGCCAAATATTTAAGGGATGCTTTACCGAATGCAACATTCGTAGGATTTACAGGCA CACCCGTAGCTTCAACGGATAAAAATACACAAATGGTTTTCGGAAACTATATCGATGTTTATGATATGACACAAGCCGTA GCTGATGGAAGTACCGTTAAAATTTACTATGAAAGTCGTGTAATTCCATTAAATCTACCTCAAAGTTTAGATTTAGATGA AGCGTATAATGACATTACTGAAGATCAAGAAGAGGATGTAAAACAGCGTTTAAAATCAAAATGGTCCCGTATTGAAGCTT TAGCAGGCGCAAAACCTCGTGTAGAAGCCCTAGCCAAAGATATCATCCAACACTTTGAAACACGTCAACAAGCGATGAAA GGTAAAGGAATGATTGTAACGATGAGTCGTCGAATTGCTGTTGATTTATATGATGAAATCATTCGTCTAAAACCAGAATG GCATTCAGATGATGATGATAAAGGGGTCATCAAAGTAGTGATGACAGGTTCATCTAGTGACCCAACTTCTTTCCAAAGAC ATATTGGTCCTAAAAAACGTCGTAGTGTATTAGAAAAACGTATGAAAGATGTGAATGATGAATTACAACTCGTGATTGTT CGAGATATGTGGCTCACAGGGTTTGATGTTCCTTCTATGCATACCATGTATATTGATAAACCAATGAAAGGGCATAATTT GATGCAAGCAATTGCTCGAGTTAATCGAGTGTTTAAAGATAAGCCGGGTGGATTAATTGTCGATTATGTGGGTATCGCCG AAAGCTTAAAAGAAGCTCTTAAAGAATATACAGAATCTGATCAAGCTCAAACGGCAATAGATACAGATAAAGCGGTTGAA TTGATGTTATTGAAGTATGATGTGATTCAAGATATGTTATATAATCTTGATTATTCTAAATTTAATTCAGAGAAAAAATC GGAACGTTATTATACAATATCGAATACGATGGATTATGTGATTGGTTTAGGTGAAGATGAACGTCAACGTTTTATTAAAA CGGTCACAGAGTTAGGTAAAGCCTTTGCGCTTTGTGCGACTGAACCTACAGCCCAAGAACTCAATGATGAAATTGCCTTC TTTAAAGCGGTTAAAGCAGGACTTGTTAAATTGTTACAACCGCCAAAAGAAGGAAAAACACGTAAAACACCTGCAGAAGT TGAAGCAGAGATTAATCAACTTGTGTCACAATCTGTTGTGACTGAAGATGTCATTGATGTTTATCAAACGCTAGGTCTTG AACAACCCGATTTATCAATCCTATCTGATGATTTCTTAAAAGATGTCGAAGGATTGAAACAAAAAAATGTTGCGGTAGAA TTATTAAATCGATTACTCAAAGGGCAAGTTAAATCATTAATGAAAACGAATGCGACAGTATCTAAGCGCTTCTCTGAGAT GTTAGGAAATTCGATTAATAAATATAATAGTCGTTCCATTGAAACATCAAAAGTGATTGAAGAACTCATTCAACTTGCCA AAGATATTAAACAAGAACAACAACGAGGAAATGAATTAGGCCTAAATTCGGATGAGATTGCGTTTTACGATGCTTTAGTT TCACATGAAACAGCGAAAAAAGCGATGGAAGACAAAAAACTACGTGCGATTGCTCACGAGCTAACTAAAACAGTGAAAGA AAACATGAGTGTTGATTGGTCTAAACGTGATAGCGCAAAAGCTAAAATGCGTGTAGCTGTTAGACGATTGCTTAAGAAAT ATGGCTATCCGCCAGATTTACAAAAAATGGCTGTAGAGCAGGTCGTAGAACAAGCAGAACTTATGGCGAGTAATCAATAA Protein sequence : MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKS PNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIEL KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAAL TERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMK GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIV RDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAF FKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVE LLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALV SHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASNQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 100 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 98 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 98 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 46 |
