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Name : lysS (SH2493) Accession : YP_254408.1 Strain : Staphylococcus haemolyticus JCSC1435 Genome accession: NC_007168 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2501808 - 2503298 bp Length : 1491 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCAGAAGAAATGAATGACCAAATGCAGGTCCGTCGTCAAAAACTACAAGAATTAATTGATTTAGGAATCGACCCATT TGGAAAACGTTTTGAGCGCTCAGCTACTGCTAGTGAACTAAAATCACAATGGGATGAATTCTCTAAAGAAGAATTACATG ATAAAGAAGATGAAAGTCATGTTTCGATTGCCGGACGTTTGATGACTAAACGTGGTAAAGGTAAAGCTGGTTTCGCACAT GTCCAAGATTTGACTGGTCAGATTCAAATTTACGTGCGTAAGGACCAAATTGGCGAAGAAGATTTCGACAATTTATGGAA AGGTGCAGACCTAGGCGATATTGTTGGTATTGAAGGTGTAATGTTCAAAACAAATACTGGCGAGCTATCAGTAAAAGCTA AGACATTCACTTTATTATCTAAAGCGCTTAGACCTTTACCTGATAAGTTCCATGGTTTACAAGATATTGAACAACGTTAT CGTCAACGTTATTTAGACTTGATTACAAATCAAGATAGTACTCAAACATTTATTAACCGTAGTAAAATTATTCAAGAAAT GCGTAATTACTTAAATAAACAAGGTTTCTTAGAAGTTGAAACACCAATGATGCATCAAATTGCAGGTGGTGCAGCAGCAC GACCATTTGTTACGCACCATAATGCACTAGACGCTACTCTTTATATGCGTATAGCAATTGAATTACATTTAAAACGATTA ATTGTTGGTGGCCTTGAAAAAGTCTATGAAATTGGACGAGTATTCCGTAACGAAGGAGTATCAACACGACATAATCCAGA ATTTACTATGATTGAATTATATGAAGCATACGCTGATTACCACGATATCATGGATTTAACTGAATCTATGGTAAGACATA TCGCTCAAGAAGTATTTGGTTCTGCAAAAGTTCAATACAATGAAGAGGAAATTGACCTAGAGTCTGCCTGGACACGCCTT CATATTGTAGATGCAGTGAAAGAAGCTACAGGTGTAGACTTCTATCAAATTAAATCTGATGAAGAAGCAATCGCTGCAGC TAAAGAACATGGTATTGAAATTACTAATAATATGAAATATGGTCATATCTTAAATGAATTCTTTGAACAAAAAGTTGAAG AAACGTTAATTCAACCAACATTTATTTATGGACATCCAATTGAAATCTCGCCTTTAGCGAAGAAAAATCCAGAAGATCCT AGATTTACAGACCGTTTCGAGTTGTTTATCGTAGGTAGAGAACATGCGAATGCATTCACTGAATTAAATGATCCAATTGA TCAACGTGAACGTTTCGAAGCACAACTTGTTGAAAAAGCACAAGGTAATGATGAAGCGCATGAAATGGATGAAGATTATA TTGAAGCTTTGGAATATGGTATGCCTCCAACAGGTGGTTTAGGTATCGGTATCGATCGCTTAGTTATGTTGTTAACTGAC TCTCCATCTATTAGAGACGTATTATTATTCCCTTACATGAGACAAAAATAG Protein sequence : MSEEMNDQMQVRRQKLQELIDLGIDPFGKRFERSATASELKSQWDEFSKEELHDKEDESHVSIAGRLMTKRGKGKAGFAH VQDLTGQIQIYVRKDQIGEEDFDNLWKGADLGDIVGIEGVMFKTNTGELSVKAKTFTLLSKALRPLPDKFHGLQDIEQRY RQRYLDLITNQDSTQTFINRSKIIQEMRNYLNKQGFLEVETPMMHQIAGGAAARPFVTHHNALDATLYMRIAIELHLKRL IVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYHDIMDLTESMVRHIAQEVFGSAKVQYNEEEIDLESAWTRL HIVDAVKEATGVDFYQIKSDEEAIAAAKEHGIEITNNMKYGHILNEFFEQKVEETLIQPTFIYGHPIEISPLAKKNPEDP RFTDRFELFIVGREHANAFTELNDPIDQRERFEAQLVEKAQGNDEAHEMDEDYIEALEYGMPPTGGLGIGIDRLVMLLTD SPSIRDVLLFPYMRQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-120 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_254408.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-120 | 50 |
