Gene Information

Name : clpC (SH2484)
Accession : YP_254399.1
Strain : Staphylococcus haemolyticus JCSC1435
Genome accession: NC_007168
Putative virulence/resistance : Virulence
Product : endopeptidase Clp ATP-binding subunit C
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 2485203 - 2487677 bp
Length : 2475 bp
Strand : -
Note : -

DNA sequence :
ATGCTATTTGGTAGATTAACTGAACGTGCACAACGTGTCCTAGCACACGCACAAGAAGAAGCAATACGTTTAAATCATTC
TAATATAGGTACAGAACATTTGTTATTAGGTTTAATGAAAGAACCAGAAGGTATTGCTGCTAAAGTATTAGAAAGTTTTA
ATATAACCGAAGATAAAGTGATTGAAGAAGTCGAAAAATTAATCGGTCACGGACAAGATCAAACAGGAACATTGCATTAT
ACACCAAGAGCCAAGAAAGTAATTGAACTTTCAATGGATGAAGCAAGAAAGTTACACCATAACTTTGTAGGTACAGAACA
CATATTACTAGGTTTAATTCGTGAAAATGAAGGCGTAGCTGCTCGCGTATTTGCTAATCTTGATTTAAATATTACGAAAG
CGCGTGCCCAAGTCGTCAAAGCGCTAGGTAGTCCTGAAATGAGCAATAAAAATGCTACAGCAAATAAATCAAATAATACC
CCTACATTAGATGGATTAGCACGTGATTTAACTGTCATTGCCAAAGATGGAACGTTAGATCCAGTTGTTGGTAGAGATAA
AGAAATTACTCGTGTAATTGAAGTGTTAAGTCGTCGTACTAAAAACAATCCTGTACTAATTGGTGAACCCGGTGTAGGTA
AAACTGCAATTGCAGAAGGTCTTGCTCAAGCTATTGTTAATAATGAAGTACCTGAGACACTTAAAGGTAAACGCGTGATG
TCACTTGATATGGGAACAGTTGTAGCTGGTACTAAATATCGTGGTGAATTTGAAGAACGTTTGAAAAAGGTAATGGAAGA
AATTCATCAAGCTGGTAACGTAATCTTATTCATTGATGAATTACACACATTAGTTGGTGCTGGTGGAGCTGAAGGCGCAA
TCGATGCGTCAAATATATTAAAACCAGCATTAGCACGTGGTGAATTACAATGTATCGGTGCGACAACATTAGATGAATAT
CGTAAAAACATCGAGAAAGATGCAGCGTTAGAACGTCGTTTCCAACCTATTCAAGTTGATGAACCAACAGTTGAAGACAC
AATTGCAATTTTAAAAGGATTACGTGATCGTTATGAAGCGCATCACCGCATCAATATTTCAGATGAAGCACTTGAAGCGG
CTGCTAAATTAAGTGATTGTTATGTATCAGATCGTTTCTTACCCGATAAAGCAATTGATTTAATTGATGAAGCAAGTTCA
AAAGTAAGACTGAAAAGTCATACAACACCTAACAACTTGAAAGAAATTGAGCAAGAAATTGAAAAAGTAAAAAATGAAAA
AGACGCAGCAGTTCATGCTCAAGAATTCGAGAATGCTGCTAATTTACGTGATAAACAAACTAAACTTGAAAAACAATATG
AAGATGCCAAAAATGAGTGGAAAACAACTCAAGGTGATCAATCCACTTCTCTATCTAAAGAAGATATTGGTGAAGTCATT
GCAGGTTGGACAGGTATACCACTTACAAAAATTAATGAAACTGAATCGGATCGATTATTAAATCTTGAACAAACGTTACA
TGATAGAGTTATTGGCCAAAATGATGCTGTAACTTCTATTAGTAAAGCGGTACGCCGTGCTCGTGCAGGATTGAAAGATC
CTAAACGTCCAATCGGTAGTTTTATCTTCTTAGGTCCTACAGGTGTAGGTAAAACAGAATTAGCTAGAGCATTAGCAGAA
TCAATGTTTGGTGAAGAAGATGCAATGATTCGCGTTGATATGAGTGAGTTTATGGAAAAACATGCTGTGAGTCGTTTAGT
TGGAGCGCCTCCAGGCTATGTAGGTCATGATGAAGGTGGCCAATTAACTGAGAAAGTAAGACGTAAACCATACTCAGTTA
TCTTATTTGATGAAATCGAAAAGGCGCATCCAGATGTATTTAATATTCTATTGCAAGTTCTAGACGATGGTCATTTAACT
GATACAAAAGGACGTCAAGTTGATTTCCGAAATACAGTGATTATCATGACTTCAAATGTCGGTGCACAAGAATTACAAGA
TCAACGCTTTGCTGGTTTCGGTGGCGGTTCTGAAGGTCATGACTATGAAACAATTCGCAAGACTATGATGAAAGAATTGA
AAAATTCATTCCGCCCAGAGTTCTTAAACCGTGTTGACGACATCATCGTATTCCATAAACTTTCTAAAGATGAATTGAAA
GAAATCGTTACAATGATGGTTAATAAACTAACACAACGACTATCTGAGCAAGATATTAATATTGTTGTAACTGATAAAGC
AAAAGAAAAAATTGCTGAAGAAGGCTATGATCCAGAATACGGTGCCCGTCCATTAATCAGAGCTATTCAAAAAACAGTTG
AAGATAACTTGAGTGAATTAATCTTAGACGGTAACCAAATTGAAGGTAAAGAAGTTGTCATCGACCATGATGGTGATGAA
TTTAAATATAATATCAATGAAAAAAATAATGGTATTTCAGATGAAGGCAATGAAGTAACTGAAACTGAAGCATAA

Protein sequence :
MLFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDQTGTLHY
TPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNATANKSNNT
PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVM
SLDMGTVVAGTKYRGEFEERLKKVMEEIHQAGNVILFIDELHTLVGAGGAEGAIDASNILKPALARGELQCIGATTLDEY
RKNIEKDAALERRFQPIQVDEPTVEDTIAILKGLRDRYEAHHRINISDEALEAAAKLSDCYVSDRFLPDKAIDLIDEASS
KVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEDAKNEWKTTQGDQSTSLSKEDIGEVI
AGWTGIPLTKINETESDRLLNLEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SMFGEEDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDEGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLT
DTKGRQVDFRNTVIIMTSNVGAQELQDQRFAGFGGGSEGHDYETIRKTMMKELKNSFRPEFLNRVDDIIVFHKLSKDELK
EIVTMMVNKLTQRLSEQDINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILDGNQIEGKEVVIDHDGDE
FKYNINEKNNGISDEGNEVTETEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpC YP_254399.1 endopeptidase Clp ATP-binding subunit C VFG0079 Protein 0.0 71
clpC YP_254399.1 endopeptidase Clp ATP-binding subunit C VFG0080 Protein 4e-164 53