|
Name : smpB (SH2104) Accession : YP_254019.1 Strain : Staphylococcus haemolyticus JCSC1435 Genome accession: NC_007168 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 2134543 - 2135013 bp Length : 471 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCTAAGAAGAAAACGAAATCACCCGGTACACTAGCTGAAAACCGTAAAGCCAGACATGATTATAATATTGAAGATAC AATTGAAGCGGGTATTGCTTTAAAGGGAACAGAGATTAAATCTATTCGTCGAGGTAGTGCCAATTTGAAAGATAGCTATG CTCAAGTTAAACGTGGCGAGATGTTCATTAATAATATGCACATTGCACCTTATGAGGAAGGTAACCGTTTCAATCATGAC CCTTTACGTTCTAGAAAGTTATTACTTCATAAGAAGGAAATTATTAAACTTGGGGAACGTACGAGAGAAATTGGCTATTC ACTTATTCCATTAAAACTTTATTTAAAACATGGTCAATGTAAAGTCTTATTAGGCGTAGCACGTGGTAAGAAAATACATG ATAAACGTCAAGCTTTAAAAGATAAAGCAATGAAACGTGATGTTGATCGTGCAATCAAAGACCGTTATTAA Protein sequence : MAKKKTKSPGTLAENRKARHDYNIEDTIEAGIALKGTEIKSIRRGSANLKDSYAQVKRGEMFINNMHIAPYEEGNRFNHD PLRSRKLLLHKKEIIKLGERTREIGYSLIPLKLYLKHGQCKVLLGVARGKKIHDKRQALKDKAMKRDVDRAIKDRY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-50 | 87 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 6e-22 | 46 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 1e-21 | 45 |
