Gene Information

Name : tnp (SH2041)
Accession : YP_253956.1
Strain : Staphylococcus haemolyticus JCSC1435
Genome accession: NC_007168
Putative virulence/resistance : Unknown
Product : IS1272 transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3666
EC number : -
Position : 2094893 - 2096575 bp
Length : 1683 bp
Strand : -
Note : -

DNA sequence :
ATGTATAAAAATTATAACATGACTCAACTTACTCTACCAATGGAAACTTCAGTTCTTATCCCCACAAATGATATTTCACG
ACATGTAAATGATATTGTTGAAACAATTCCTGACAATGAATTCGACGAATTCAGACATCACCGTGGTGCAACTTCGTACC
ATCCTAAAATGATGTTAAAAGTGATTCTATATGCCTACACACAATCTGTATTCTCAGGTCGTAAAATAGAAAAAATGCTT
AATGATAGCATCCGAATGATGTGGCTATCACAAAATCAAAAACCTTCTTATAAAACAATTAATCGATTTAGAGTAAATCC
AAAAGTAGATGCTTTATTAGAATCTTTATTTATTCAATTTTACAGTCAGTGTGTAAAACAAAATCTTATAGATGATAAAG
CTATTTTTATTGATGGTACAAAAATTGAAGCAAAAGCCAATCGATATACATTTGTATGGAAAAAGAGTATTCAAAACCAT
GAATCAAAGATGAATGAGGATTCTAAAGCCCTCTACCATGAATTGGTAACCAATAAAATCATACCGGAAATTAAAGAAGA
TCATGATAATGAATTAACAAAAGAAGAAATAGATTTGATTGGTAGTCACTTAGATAAAGAAATCGAAGATTTAAACCAAC
ATATCAACAATGAAAAATGTACTAAAACAAGAAAACAAATACGTCTCAAAAGAACTAAAATCAAAAAATACAAAAAGCAA
ATCAATGATTATTTTGAGCGAAAGTATCGATACGAATTTCAAAAATCTATTTTAAAGGACAGAAATAGTTATTCTAAGAC
AGATCATGATGCGACCTTTATGAGGATGAAAGAAGATCACATGAAAAATGGACAACTTAAGCCAGGGTATAATTTACAAA
TAGCGACAAATTCCCAATTTGTTTTATCTTATAATGTGTATCAAAATCCAACGGATACTAGAACGATGATTCCATTTTTA
AATTCAATTCAAGAGACCTACGGTCATTTACCTGAATATATTGTAGCTGATGCAGGTTATGGTAGTGAATCAAATTATAA
GGCAATTATAGATGACTTTAATCGAACGCTACTCATAACATATGGAATGTTTATAAAAGATAAAACTAAAAAATATAAAA
GTGACATCTTTAATACTCAAAATTGGAACTATGACGAAATTAATGACGAATTCATTTGTCCGAATAATAAACGGCTAGGT
TTTAAAAGATATGCCTATCGTCATGATAAGTATGGTTATAAGCGAGACTTCAAATTATATGAATGTGATGATTGTTCAGA
ATGTCCTCTGAAAAATCAATGTATGAACTTCAATTCAAAAACAAACAAAAAAATAATGAAGAATTATAACTGGGAATATT
TTAAATCCCAAATTAACAAAAAGCTTTCAGAACCAGAAACAAAAAATATCTACAGTCAAAGAAAAATTGATGTGGAACCT
GTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGGATGTCTGTCCGAGGACTCAATAAAGTCAAAAGAGAACTTGG
TTTTGTATTAATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTATAAAAAAGACA
ATTTCTATATTATTTCAATAGAAATTGTCTTTTTTTCACTTATCCAAGAACTTTATGTCCCGGACTCTTTCAATTTAAAA
TGA

Protein sequence :
MYKNYNMTQLTLPMETSVLIPTNDISRHVNDIVETIPDNEFDEFRHHRGATSYHPKMMLKVILYAYTQSVFSGRKIEKML
NDSIRMMWLSQNQKPSYKTINRFRVNPKVDALLESLFIQFYSQCVKQNLIDDKAIFIDGTKIEAKANRYTFVWKKSIQNH
ESKMNEDSKALYHELVTNKIIPEIKEDHDNELTKEEIDLIGSHLDKEIEDLNQHINNEKCTKTRKQIRLKRTKIKKYKKQ
INDYFERKYRYEFQKSILKDRNSYSKTDHDATFMRMKEDHMKNGQLKPGYNLQIATNSQFVLSYNVYQNPTDTRTMIPFL
NSIQETYGHLPEYIVADAGYGSESNYKAIIDDFNRTLLITYGMFIKDKTKKYKSDIFNTQNWNYDEINDEFICPNNKRLG
FKRYAYRHDKYGYKRDFKLYECDDCSECPLKNQCMNFNSKTNKKIMKNYNWEYFKSQINKKLSEPETKNIYSQRKIDVEP
VFGFMKAILGFTRMSVRGLNKVKRELGFVLMALNIRKVVAQRAENNQKIYKKDNFYIISIEIVFFSLIQELYVPDSFNLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnp YP_254534.1 IS1272 transposase Not tested ¥ðSh2 Protein 0.0 99
SAUSA300_0034 YP_492755.1 IS1272, transposase Not tested Type-IV SCCmec Protein 0.0 97
SACOL0036 YP_184947.1 IS1272 transposase Not tested Type-I SCCmec Protein 0.0 97
SAMSHR1132_00350 YP_005324559.1 putative transposase Not tested Type-IIIinv SCCmec Protein 0.0 97
MW0034 NP_644849.1 hypothetical protein Not tested Type-IV SCCmec Protein 0.0 97
unnamed BAA86649.1 hypothetical protein Not tested Type-I SCCmec Protein 0.0 97
SE0076 NP_763631.1 transposase Not tested SCCpbp4 Protein 0.0 89