Gene Information

Name : tnp3520a2 (jk1232)
Accession : YP_251015.1
Strain : Corynebacterium jeikeium K411
Genome accession: NC_007164
Putative virulence/resistance : Unknown
Product : transposase IS3520
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1447101 - 1448009 bp
Length : 909 bp
Strand : -
Note : -

DNA sequence :
ATGATCTCCTACATCGATGAATACAAGGAGCAATTTGGGGTCGAGGCCATCTGCCGTGTTTTGAAACAGGCAGATCGTGG
ATTCATCACCTCACGCGGCTACCGTAAAGCCACTACACGTGCGCCCAGTGCGAGGGCTTTAAGTGATAGCCTGCTTATCC
CAGAGATCCAGCGTGTGCATGCAGAGAATTTCTCGGTTTACGGAATCTGCAAGATGTGGCACGCGATGAACCGCGAGGGC
TTTCCTATCGGCCGCGATAAGACCGCACGCCTGATGAACCTAGCGGGTGTCAGCGGTCGGCGCCGTGGGCGTAATCCAGT
AACAACGATGAGTGCGAAAGTATCGGATCGTCGCCCCGATGTGGTTCAACGCAACTTTCGTGCCCAGGCCCCTGGGCGGC
TGTGGGTGTCCGACATTACCTACGTTCGTACTTTGTCTGGCTTCGCCTACACCGCGTTTGTCGTGGATGTCTACAACCGG
AAAATCGTTGGTGTTGCCACTCGCTCGACGATGCGTACCGATGCGCTGCCGATGGAGGCGTTGGAGCATGCTCTCACGGC
GGCCGGCCGGGTTCATGGAAGCCAGCTGATTCACCACAGTGACCGGGGTAGTCAGTACGTGTCGTTGAAGTATTCCACGG
CCTTGGCGCAAGCCGGAATTCGGCCCAGTGTGGGAACGGTCGGTGATTCTTATGACAACGCTCTCGCCGAAACGGTTAAT
GGTCTCTACAAAGCAGAATTGATTCATGCCCAAGGTCCGTGGACATCGGTCGGAGAAGTTGAACTGGCCACCTTGCGGTG
GGTTCATTGGTGGAACACCAAGCGACTTCACGAAGCATTGGATTACGCCACCCCACAGGAAGTGGAAACCGAGTACTATC
TCACCGAGCCCATCAACACAGGGTCGTAA

Protein sequence :
MISYIDEYKEQFGVEAICRVLKQADRGFITSRGYRKATTRAPSARALSDSLLIPEIQRVHAENFSVYGICKMWHAMNREG
FPIGRDKTARLMNLAGVSGRRRGRNPVTTMSAKVSDRRPDVVQRNFRAQAPGRLWVSDITYVRTLSGFAYTAFVVDVYNR
KIVGVATRSTMRTDALPMEALEHALTAAGRVHGSQLIHHSDRGSQYVSLKYSTALAQAGIRPSVGTVGDSYDNALAETVN
GLYKAELIHAQGPWTSVGEVELATLRWVHWWNTKRLHEALDYATPQEVETEYYLTEPINTGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 1e-83 60
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 5e-60 58
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-46 50
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-51 47
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-51 47
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-51 47
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-49 46
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 5e-51 46
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-50 46
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-51 46
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-50 46
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-50 46
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 3e-48 45
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 3e-50 45
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-48 45
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-49 45
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-49 45
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-50 45
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-49 45
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-49 45
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-32 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnp3520a2 YP_251015.1 transposase IS3520 VFG1602 Protein 2e-48 45