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Name : lysS (jk1200) Accession : YP_250982.1 Strain : Corynebacterium jeikeium K411 Genome accession: NC_007164 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1407855 - 1411103 bp Length : 3249 bp Strand : - Note : catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : GTGAAAGCTGAACCCAGAAGCACTCCAGGCCCGCTAGCAGGATCACGTGGATTCTTTCCTCGCTTCATCGGAACCATCCT CTGCGCCTATGCGCTAATGGCGCTAGTGCTGAGTATCTCCACCGCAGCGCGCGTGCATGTTCGCCAGTTGCTGGTGGTGA TGGATAATGTCTTCCTGCCCGTCCCCGTGCCCTCCGTCGCGTGGTCCGCCGCGCTGTTGGTGCTGGGCATAGGTCTCTAC CAGGCCAAACGTGCCGCCTGGGTGGTAGCCGTGGCCGCGCTGCTGATCCTTAACTGCAGCAACCTGCTACTGCTTTTGCT ACCTCAATACTTCGACGTTGGCCCTGAGTGGGCGCACTCGCTTTTCATAGCGGGAATGGTCGTACAGTTCTTTTTGCTGC TCCTGATGATCTGGCGACGTAGAGACTTCTACACGCACACAGTCAAAGGCGCGATCCTGGCTGCCTTCCTGCTCTGGCTG GGCGGCAGTGTTGCCGTGTTCCTGATTGCTTTGGTGCTGGTGCATTTCTTCCATGGCAACCTGGCGCCGGAATGGCGGGC GCTGTGGGCGCTGAACCACTCTGCTGGATTCTCCCTCTTCAACCACGTACATACGGGCGGCCACCCGCCGAAGCTTATCT CCTTCCTGGTCTCCGCCCTGTCTGCGATGGTGTTGCTGGCAGCCGGATTGATGTTGCTGCGCTCCCATCGGGACCAATTC GGCATCACAGCTGAGGACGAATCTGCTCTGCGAGCCCTCATCCGACGTTTCAACAGCAATGACTCGCTGGCCTACTTTGC CACCCGGCGGGATAAGTCCGTGGTCTACGAACCTAAGGGCCGCGCGGCAGTGACCTACCGAATTGAGGCCGGTGTGTGTT TGGCGTCCGCCGACCCCATTGGCGATCCACGGTTCTGGGATCAGGCAGTCGCGGCTTGGCTGGACCGAGCACGAGCCTTT GGGTGGGTGCCGGCGGTCATGGGGGCGTCCGAACAGGGAACAAGAGCCTACGAGAAGCAGGGGCTAAGCTCCATCCACTT GGGCGACGAAGCTGTGATCGATACGCAGAACTTCCACCTTTCCGAGTTACGGGAAGTGCGTCAGGCGCGCGCCCATGCGC AAAAGGCCGGCGTGCGGGTGCGTATCCGGCGCCACGGCGAACTCAATGCCCAAGAGATGCAGCGCGTAGACGACCTGGCT GAAAAGTGGCGGGATACAACCGACGAACGTGGCTTCTCCATGGCGCTCGGAAGGCTCGGCGATCCACAAGACAAGGACTG TCTCTTGGCAGAGGCCCTGGTGGGGGACGAGACAGTAGCAGTGCTGTCGTTTATCCCCTGGGGCCTAAATGGCGCCTCGT TGGACCTTATGCGTCGCAGCCCGGAAGCGCCCAACGGCACGGTCGAAGCGATGATCGTGGCCCTGTGCACCGAAGCGAAC CTGCACAAGCTCTCTCTGAACTTCGCAGTTTTCCGCGAACTGTTCGCCAGCGAGGATGCCGTGGCCGTGGGGCCTATTCG CAGGCAAGCGCGCCGGGTGCTGACATATCTGTCGAAGTGGTGGCAGATGGAGACGCTCTATCGCTCCAACCAGAAGTACA AGCCAGTGTGGATCCCGCGGTATGTCTGTTACCCGGATTCCTTGTCGATGGCGCGCGTGGGCATTGCATCTGGCATTGCG GAGGGCTTCGTACCCACTTTCGGCAGCGCGTTCGGTAGTTTGTTTGGGCGGGGAACCGAGGAGCATCGTGAATACGCCAC CAGCGGGCAGCCCGAAGCAGCACAGGCGCTGAACTACGTTGAACAGCTAACGGATGCCCACAAGAAAACCGCCAGCGAGC AGACCGCCGTGCGAATCAAAAAGGCACTGGCATTGCGCGAAGCTGGGGTGGAGCCGTGGCCGGTCGCGGCGCGTGGTGCC GGAGAACGCTCGGACGTTGCTGTGGTGCAGTGTGTTGAGATTGCCGAAGGTAGTGACGCCACCACTTCCGGCCCGCTGCG CGTTTCAGGTCGCATCGTGGCCAAGCGCGAGTTCGGGGCAGTGTCCTTTATCGACCTGCGGGATGCCTCCGGCAAATGCC AAGTTCTGGTCGAAGCACCGAAGGAAGAACTTGCCTCGAGACTGCGTGCCCTGGATCTGGGCGACCTGATTGCAGTGGTA GGAACGCGCGGGCATTCGCGGACTGGCGAGCCTTCTCTGCTGGCAGAGGCCATCGAATTGGAGGCGAAGGATCTGCACCC CCTGACGCGCCGTGGCGCGGGGATCGGGGAGGTCAACGCCCGACTGCGTGCCAGGTCGGTGGTGAACGCCGCGATCCGCC GCACGCTGGGAGACTTGGGATTCATGGAGGTGGAAACCCCGATTCTGCAGCGTGTTCACGGTGGTGCGAATGCGCGCCCA TTTAAGACGCGGAGTAACGCTGCGAATCAGGACCTCTACCTGCGCATCGCCCCGGAGCTGTACCTGAAACGCCTGCTGAC CCAAGGGGCCGAGAAGGTCTACGAGCTGGGACGAGTGTTCCGTAACGAGGGTGTGGACGCTACCCACAACCCGGAATTTA CAACTGTGGAAGCCTACGAAGCGCACGGCGACTACGAGTCGATGCGCTGGGTAGCTCAGCGGATCATTCAGGCGGCCGCC ACTGCTTACCACGGGGAGCCGCTGGTGCTGGACCCGGAAGGCAACCTGGTGAGCATCGCCGAGAACTTCCCGGTGAAGAC CGTGTACGGGGCCATCAGTGAGAAGGTGGGGCAATCGATTACCCCGGAGACGAATTTCGAGACGCTGCTAGAGCTGTGTG CTGTCCATGGGATAGCTACCCAGCCAGGGTGGGATTCCGGTGAGGTAGTGCAGGAAATGTACGAGGCTCTGGTCGAATGC ACCACCACTATGCCGACGTTCTACACGGACTTTCCCACTAGTGTCTCGCCGCTGACCCGCCAGCACCGAAGCCAGCCGGG CGTGGCCGAGCGCTGGGACCTCGTTGCCTGGGGAGTAGAGCTCGGAACAGCGTATTCGGAGCTTACCGACCCTCTGGAAC AACGTGACCGCCTGGAGGCGCAGTCGCTGAAGGCAGCGGGTGGCGACCCGGAAGCGATGGAGGTTGATGAGGCGTTTCTG CGTGCCTTGGAAGACGGCATGCCGCCGACTGGCGGGTTGGGGCTTGGCGTTGACCGCCTCATCATGCTGCTCACGGGGCG TTCAATCCGGGAGGTCCTCAGTTTCCCAGCCCACCCCGGCGGGCAATAA Protein sequence : MKAEPRSTPGPLAGSRGFFPRFIGTILCAYALMALVLSISTAARVHVRQLLVVMDNVFLPVPVPSVAWSAALLVLGIGLY QAKRAAWVVAVAALLILNCSNLLLLLLPQYFDVGPEWAHSLFIAGMVVQFFLLLLMIWRRRDFYTHTVKGAILAAFLLWL GGSVAVFLIALVLVHFFHGNLAPEWRALWALNHSAGFSLFNHVHTGGHPPKLISFLVSALSAMVLLAAGLMLLRSHRDQF GITAEDESALRALIRRFNSNDSLAYFATRRDKSVVYEPKGRAAVTYRIEAGVCLASADPIGDPRFWDQAVAAWLDRARAF GWVPAVMGASEQGTRAYEKQGLSSIHLGDEAVIDTQNFHLSELREVRQARAHAQKAGVRVRIRRHGELNAQEMQRVDDLA EKWRDTTDERGFSMALGRLGDPQDKDCLLAEALVGDETVAVLSFIPWGLNGASLDLMRRSPEAPNGTVEAMIVALCTEAN LHKLSLNFAVFRELFASEDAVAVGPIRRQARRVLTYLSKWWQMETLYRSNQKYKPVWIPRYVCYPDSLSMARVGIASGIA EGFVPTFGSAFGSLFGRGTEEHREYATSGQPEAAQALNYVEQLTDAHKKTASEQTAVRIKKALALREAGVEPWPVAARGA GERSDVAVVQCVEIAEGSDATTSGPLRVSGRIVAKREFGAVSFIDLRDASGKCQVLVEAPKEELASRLRALDLGDLIAVV GTRGHSRTGEPSLLAEAIELEAKDLHPLTRRGAGIGEVNARLRARSVVNAAIRRTLGDLGFMEVETPILQRVHGGANARP FKTRSNAANQDLYLRIAPELYLKRLLTQGAEKVYELGRVFRNEGVDATHNPEFTTVEAYEAHGDYESMRWVAQRIIQAAA TAYHGEPLVLDPEGNLVSIAENFPVKTVYGAISEKVGQSITPETNFETLLELCAVHGIATQPGWDSGEVVQEMYEALVEC TTTMPTFYTDFPTSVSPLTRQHRSQPGVAERWDLVAWGVELGTAYSELTDPLEQRDRLEAQSLKAAGGDPEAMEVDEAFL RALEDGMPPTGGLGLGVDRLIMLLTGRSIREVLSFPAHPGGQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 4e-156 | 43 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 4e-156 | 43 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 4e-156 | 43 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-155 | 43 |
